View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12552_high_6 (Length: 427)
Name: NF12552_high_6
Description: NF12552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12552_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Original strand, 5441024 - 5441427
Alignment:
| Q |
18 |
gtgttgccactctcgaatgcagctgtaggttgtgccaatgtcgatgccaatggcttttctttttgttattgccacgacaattgagagtttgagaggagag |
117 |
Q |
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| T |
5441024 |
gtgttgccactctcaaatgcagctgtaggttgtgccaatgtcgatgccaatggcttttctttttgttattgccacgacaaacgagagtttgagaggagag |
5441123 |
T |
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| Q |
118 |
aacaaaagaaaatgatgttttgggtagtaaactgaaaatctggatgtgattgataaaaaagaactcgtatttataggcaaagaaaacaggggtatttctt |
217 |
Q |
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| T |
5441124 |
aacaaaagaaaatgatgttttgggtagtaaactgaaaatctggatgtgattgataaaaaagaactcgtatttataggcaaagaaaacaggggtatttctt |
5441223 |
T |
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| Q |
218 |
ctatatcaaaagtcttattgaagaaaaattggggaatggggaaatgtatggaaaatacacaaataattgggcagagg-----aagattttgcaatttcca |
312 |
Q |
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| T |
5441224 |
ctatatcaaaagtcttattgaagaaaaattggggaatggggaaatgtatggaaaatacacaaataattgggcagaggaagctaagattttgcaatttcca |
5441323 |
T |
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| Q |
313 |
aagaacttgaattggggtccttagcttgatcaagttttggaatcgtgtatttcaatattcattgatccttgatcaggtcattatttctacacattggaat |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5441324 |
aagaacttgaattggggtccttagcttgatcaagttttggaatcgtgtatttcaatattcattgatccttgatcaactcattatttctacacattggaat |
5441423 |
T |
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| Q |
413 |
tcat |
416 |
Q |
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| T |
5441424 |
tcat |
5441427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 176
Target Start/End: Complemental strand, 5445176 - 5445035
Alignment:
| Q |
33 |
aatgcagctgtaggttgtgccaatgtcgatgccaatggcttttctttttgttattgccacgacaattgagagtttgagaggagagaacaaaagaa-aatg |
131 |
Q |
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||||||||||||| |||| |||| ||| ||||| |||||||| |||||| || |||||| || || | ||||||||||||||||||||||| |||| |
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| T |
5445176 |
aatgcagctgtagcttgtaccaaggtcaatgcctatggctttgctttttcttgttgccattgcacttaa---tttgagaggagagaacaaaagaagaatg |
5445080 |
T |
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| Q |
132 |
atgttttgggtagtaaactgaaaatctggatgtgattgataaaaa |
176 |
Q |
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| T |
5445079 |
gtgttttggttagtgaaccgagaatatggatctgattgatcaaaa |
5445035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 367 - 416
Target Start/End: Complemental strand, 5444879 - 5444830
Alignment:
| Q |
367 |
atattcattgatccttgatcaggtcattatttctacacattggaattcat |
416 |
Q |
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| T |
5444879 |
atattcattgatccttgatcaactcattatttctacacataggaattcat |
5444830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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