View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12552_high_7 (Length: 393)
Name: NF12552_high_7
Description: NF12552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12552_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 382
Target Start/End: Original strand, 7666900 - 7667283
Alignment:
| Q |
1 |
attagtccattctagaccaccaatcaacgtggtc---accacggtagaccccgcctaaagacaaaagtagttatgaaacccatctcttacccatggccag |
97 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7666900 |
attaatccattctagaccaccaatcaacgtggtccacaccacggtagaacccgcctaaagacaaaagtagttatgaaatccatctcttacccatggccag |
7666999 |
T |
|
| Q |
98 |
aaatcatccaattaacaaattgtggaagagtgaacttcaaaagagctctagctacatgaacaccagggtgctttatttgcatatctgttggcttctaaca |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7667000 |
aaatcatccaattaacaaattgtggaagagtgaacttcaaaagagctctagctacatgaacaccagggtgctttatttgcatatctgttagcttctaaca |
7667099 |
T |
|
| Q |
198 |
aagnnnnnnngtgttgagtgttnnnnnnnntcattttaggcaaagattttgaaagtatttaagtaagttggaaagaacatactgaatgaggccaaagttg |
297 |
Q |
| |
|
| |||| | |||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7667100 |
ga-aaaaaaagtgtgaaatgttaaaaaaaattatttgaggcaaagattttgaaagtatttaagtaagttggaaagaacatactgaatgaggccaaagttg |
7667198 |
T |
|
| Q |
298 |
aaattgaatgtaaggtctatagttgactagcatttttgatgccatcctgctagctgtatgtaacaccctaacccttgggattctt |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7667199 |
aaattgaatgtaaggtctatagttgactagcatttttgatgccatcctgctagctgtatgtaacaccctaacccttgggattctt |
7667283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University