View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12552_high_9 (Length: 378)

Name: NF12552_high_9
Description: NF12552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12552_high_9
NF12552_high_9
[»] chr2 (3 HSPs)
chr2 (16-281)||(1615042-1615302)
chr2 (29-233)||(24455839-24456036)
chr2 (230-279)||(24455400-24455449)
[»] chr3 (2 HSPs)
chr3 (16-235)||(49234318-49234533)
chr3 (16-233)||(49233747-49233959)
[»] chr1 (3 HSPs)
chr1 (16-233)||(50862518-50862730)
chr1 (180-233)||(47723984-47724037)
chr1 (180-233)||(47730976-47731029)
[»] chr8 (3 HSPs)
chr8 (16-233)||(43228075-43228285)
chr8 (16-211)||(14839131-14839319)
chr8 (237-279)||(43227620-43227662)
[»] chr7 (1 HSPs)
chr7 (16-211)||(27962371-27962559)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 1615042 - 1615302
Alignment:
Q  16 aaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaa 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||    
T  1615042 aaaacgcatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagt-----tgaaacataaagagaaaaatcagaacacggggaagaaaaaa 1615136  T
Q  116 tgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615137 tgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgat 1615236  T
Q  216 ctctctccaaactatgcatatatagtcattcttctttcaagcttcacaatgttgaatttgcctacc 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615237 ctctctccaaactatgcatatatagtcattcttctttcaagcttcacaatgttgaatttgcctacc 1615302  T

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Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 29 - 233
Target Start/End: Complemental strand, 24456036 - 24455839
Alignment:
Q  29 acaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaatgccactacatag 128  Q
    |||||||||||||||||||||||||||||||| |||||||     ||| | || |  ||||||||||||||||  |||| |||||||| ||||||| |||    
T  24456036 acaaaggcaaagagaagaaaataaaaccgatatggtgcag-----ctggaccaca--gagaaaaatcagaacatagggaggaaaaaataccactacgtag 24455944  T
Q  129 cagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgatctctctccaaact 228  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  24455943 cagctgcaataccaaaacactgctgttgcattacattagtccacatgccgaaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaatt 24455844  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 230 - 279
Target Start/End: Complemental strand, 24455449 - 24455400
Alignment:
Q  230 tgcatatatagtcattcttctttcaagcttcacaatgttgaatttgccta 279  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24455449 tgcatatatagtcattcttctttcaagcttcacaatattgaatttgccta 24455400  T

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Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 49234318 - 49234533
Alignment:
Q  16 aaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaa 115  Q
    ||||||||||||||| ||||||||||||||||| ||||||| ||| |      |||||||| |||| ||| ||| |||||||||||| |||| |||||||    
T  49234318 aaaacacatgaagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcagaacacagggaggaaaaaa 49234412  T
Q  116 tgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgc-agaaaatcacctcga 214  Q
    ||||||||  ||||||||||| ||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||    
T  49234413 tgccactatgtagcagctgcagtaccaaaacactgctgctgcattacattagcccacatgcagaaaaccagctctaaattatgcaagaaaatcacctcga 49234512  T
Q  215 tctctctccaaactatgcata 235  Q
    |||| ||||||| ||||||||    
T  49234513 tctcgctccaaattatgcata 49234533  T

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Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 49233747 - 49233959
Alignment:
Q  16 aaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaa 115  Q
    ||||||||||||||| ||||||||||||||||| ||||||| ||| |      |||||||| |||| ||| ||| |||||| ||||| |||| |||| ||    
T  49233747 aaaacacatgaagaccaaggcaaagagaagaaattaaaaccaatatg-----ttgcagctggaacacaaatagacaaatcaaaacacagggaggaaagaa 49233841  T
Q  116 tgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgat 215  Q
    ||||||||  ||||||||| | ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  49233842 tgccactatgtagcagctgtagtaccaaaacactgctgctgcactacattagtccacatgccgaaaaccagctctaaattatgcagaaaatcacctcgat 49233941  T
Q  216 ctctctccaaactatgca 233  Q
    ||| ||||||| ||||||    
T  49233942 ctcgctccaaattatgca 49233959  T

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Target: chr1 (Bit Score: 94; Significance: 8e-46; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 50862730 - 50862518
Alignment:
Q  16 aaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaa 115  Q
    ||||||||||||||| ||||||||||||||||| ||||||  ||| | ||||||     || |||| ||| ||| |||||||||||| |||| |||||||    
T  50862730 aaaacacatgaagaccaaggcaaagagaagaaattaaaactaatatgttgcagt-----tggaacacaaatagacaaatcagaacacagggaggaaaaaa 50862636  T
Q  116 tgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgat 215  Q
     |||||||  || |||||||| ||||||| || ||||| | |||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||    
T  50862635 cgccactatgtaccagctgcagtaccaaagcagtgctgatacactacattagtccacatgccgaaaatcagctctaaattatgcagaaaatcacctcgat 50862536  T
Q  216 ctctctccaaactatgca 233  Q
    ||| ||||||| ||||||    
T  50862535 ctcgctccaaattatgca 50862518  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 47724037 - 47723984
Alignment:
Q  180 aaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca 233  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  47724037 aaaccagctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgca 47723984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 47731029 - 47730976
Alignment:
Q  180 aaaccagctctaaattatgcagaaaatcacctcgatctctctccaaactatgca 233  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||    
T  47731029 aaaccagctctaaatgatgcagaaaatcacctcgatctcgctccaaattatgca 47730976  T

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Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 43228285 - 43228075
Alignment:
Q  16 aaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaa 115  Q
    |||||||| |||||| ||||||||||||||||| ||||||||||| | |||||     ||| |||| |  |||| |||||||||| | |||| |||||||    
T  43228285 aaaacacacgaagaccaaggcaaagagaagaaagtaaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgcagggaggaaaaaa 43228193  T
Q  116 tgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacctcgat 215  Q
     ||||| |  ||| ||||||| | | ||||||||||||||||||||||||||||||||||  |||| ||| |||||||||||||||||||||||| ||||    
T  43228192 cgccaccaggtagaagctgcagtgcaaaaacactgctgctgcactacattagtccacatgccgaaagccaactctaaattatgcagaaaatcaccccgat 43228093  T
Q  216 ctctctccaaactatgca 233  Q
    ||| ||||||| ||||||    
T  43228092 ctcactccaaattatgca 43228075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 14839319 - 14839131
Alignment:
Q  16 aaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaa 115  Q
    ||||||| |||||||| ||| |||||||||||||||||||||||| | |||||     ||| |||| |  |||| ||||||||||   |||| |||||||    
T  14839319 aaaacacttgaagacagaggaaaagagaagaaaataaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgtagggaggaaaaaa 14839227  T
Q  116 tgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacct 211  Q
      || |||| |||||| |||| ||||||||||| || |||||| |||||||||||| |||  |||||||||||||||| ||||  |||||| ||||    
T  14839226 ctccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaaactatgtcgaaaattacct 14839131  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 237 - 279
Target Start/End: Complemental strand, 43227662 - 43227620
Alignment:
Q  237 atagtcattcttctttcaagcttcacaatgttgaatttgccta 279  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  43227662 atagtcattcttctttcaagcttcacaatgttgaatttgccta 43227620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 27962371 - 27962559
Alignment:
Q  16 aaaacacatgaagacaaaggcaaagagaagaaaataaaaccgatacggtgcagtgcagctgaaacataaagagaaaaatcagaacacggggaagaaaaaa 115  Q
    ||||||| |||||||| ||| |||||||||||||||||||||||| | |||||     ||| |||| |  |||| ||||||||||   |||| |||||||    
T  27962371 aaaacacttgaagacagaggaaaagagaagaaaataaaaccgatatgttgcag-----ctggaacaca--gagacaaatcagaacgtagggaggaaaaaa 27962463  T
Q  116 tgccactacatagcagctgcaataccaaaacactgctgctgcactacattagtccacatgtagaaaaccagctctaaattatgcagaaaatcacct 211  Q
      || |||| |||||| |||| ||||||||||| || |||||| |||||||||||| |||  |||||||||||||||| ||||  |||||| ||||    
T  27962464 ctccgctacgtagcaggtgcagtaccaaaacaccgcggctgcattacattagtccatatgctgaaaaccagctctaaactatgtcgaaaattacct 27962559  T

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