View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12552_low_1 (Length: 860)
Name: NF12552_low_1
Description: NF12552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12552_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 687; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 95 - 843
Target Start/End: Original strand, 42671546 - 42672296
Alignment:
| Q |
95 |
tatataatcattttgtaattgaaagaggttaaaaaa-tgtaaagccttgttgagttggaataacatctgacagcatatataaagtttagaatatattact |
193 |
Q |
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| T |
42671546 |
tatataatcattttgtaattgaaagaggttaaaaaaatgtaaagccttgttgagttggaataacatctgacagcatatataaagtttagaatatattact |
42671645 |
T |
|
| Q |
194 |
tttctatatgtgattgtcaagaacgtgactaagccataaacatcagcttggtacagctcattttgtggatttggattgcttactgtaataaatccatgca |
293 |
Q |
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| T |
42671646 |
tttctatatgtgattgtcaagaacgtgactaagccataaacatcagcttggtacagctcattttgtggatttggattgcttactgtaataaatccatgca |
42671745 |
T |
|
| Q |
294 |
ttcatacaaatagaaaacacattttgatatttttt-aactccaaaatatcgtgcttttcaagcctagattgtctgatcttgatccaatgaccaccaatgt |
392 |
Q |
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| T |
42671746 |
ttcatacaaatagaaaacacattttgatatttttttaactccaaaatatcgtgcttttcaagcctagattgtctgatcttgatccaatgaccaccaatgt |
42671845 |
T |
|
| Q |
393 |
gnnnnnnnnaagagatgaccgacaatgtgttgattgtatgaatgcgtaatatttgtgactgctcacaatccaaatcctcatttttgtgggttacacacat |
492 |
Q |
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| T |
42671846 |
gttttttttaagagatgaccgacaatgtgttgattgtatgaatgcgtgatatttgtgactgctcacaatccaaatcctcatttttgtgggttacacacat |
42671945 |
T |
|
| Q |
493 |
gtgaccactagaaatattgtcgtccacatggaatataaaataatttcttagccttttcaaacacataacttatttggccttttctcttcccattagtact |
592 |
Q |
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| T |
42671946 |
gtgaccactagaaatattgtcgtccacatggaatataaaataatttcttagccttttcaaacacataacttatttggccttttctcttcccattagtact |
42672045 |
T |
|
| Q |
593 |
atatagataagtggcataatgttgttcttggtgtcttagctatccattaactcttcatttttacaatgccaatatccatattgaagttgatgtttcctct |
692 |
Q |
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| T |
42672046 |
atatagataagtagtataatgttgttcttggtgtcttagctatctattaactcttcatttttacaatgccaatatccatattgaagttgatgtttcctct |
42672145 |
T |
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| Q |
693 |
actcttcatagctatgattcttccaaaatctggtaatgaaaacatacatgtgttccaaaatatatcaaattgttacatttttacaatgttattagtctag |
792 |
Q |
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| T |
42672146 |
actcttcatagctatgattcttccaaaatctggtaatgaaaacatacttgtgttccaaaatatatcaaattgttacatttttacaatgttattagtcgag |
42672245 |
T |
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| Q |
793 |
aaatgttaacattacaaactcttttaggtgattcttaattttcctccctct |
843 |
Q |
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| T |
42672246 |
aaatgttaacattacaaactcttttaggtgattcttaattttcctccctct |
42672296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 763 - 810
Target Start/End: Complemental strand, 37346794 - 37346747
Alignment:
| Q |
763 |
tgttacatttttacaatgttattagtctagaaatgttaacattacaaa |
810 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37346794 |
tgtttcatttttacaatgttattagtctagaaatgtaaacattacaaa |
37346747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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