View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12552_low_11 (Length: 350)
Name: NF12552_low_11
Description: NF12552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12552_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 27331780 - 27332115
Alignment:
| Q |
1 |
gaaagaaagaaaaaatggcaatcacactgaatagcggattcaagatgccaatcattgggcttggagtttggcgcatggaaggacaagcaatcaaagactt |
100 |
Q |
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| T |
27331780 |
gaaagaaagaaaaaatggcaatcacactgaacagcggattcaagatgccaatcattggacttggagtttggcgcatggaaggacaagcaatcaaagactt |
27331879 |
T |
|
| Q |
101 |
aattatcaattccatcaaaatcggttatcgtcattttgattgtgctggtattttcnnnnnnnactccttcaaatttagatttcaatctagttttttagct |
200 |
Q |
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| T |
27331880 |
aattatcaattccataaaaatcggttatcgtcattttgattgtgctggtattttctttttttactccttcaaatttagatttcaatctagttttttagct |
27331979 |
T |
|
| Q |
201 |
cgttgttttgaattttgattgtgttgtagctgactacaagaacgaagcagaagttggagaagcacttaaagaagcttttgacactggacttgtgaagagg |
300 |
Q |
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| T |
27331980 |
cgttgttttgaattttgattgtgttgtagctgactacaagaacgaagcagaagttggagaagcacttaaagaagcttttgacactggacttgtgaagagg |
27332079 |
T |
|
| Q |
301 |
gaggatcttttcattaccaccaaggtacaatttgat |
336 |
Q |
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| T |
27332080 |
gaggatcttttcattaccaccaaggtacaatttgat |
27332115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 267 - 323
Target Start/End: Complemental strand, 32566779 - 32566723
Alignment:
| Q |
267 |
taaagaagcttttgacactggacttgtgaagagggaggatcttttcattaccaccaa |
323 |
Q |
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| T |
32566779 |
taaagaagcttttgacactggacttgtgaagaaggaggatcttttcattacaaccaa |
32566723 |
T |
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