View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12552_low_14 (Length: 303)
Name: NF12552_low_14
Description: NF12552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12552_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 105 - 276
Target Start/End: Complemental strand, 38093137 - 38092965
Alignment:
| Q |
105 |
tttgcctccaccaatatattcaaggaaattttgcaacaagaacaaatattcctggatcccacaatttgaatgaagatcttgttctcatagacgtatcaaa |
204 |
Q |
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| T |
38093137 |
tttgcctccaccaatatattcaaggaaattttgcaactagaacaaatattcgtggatcccacaatttgaatgaagatcttgttctcatagacgtatcgaa |
38093038 |
T |
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| Q |
205 |
ttgtccgaaggaatcccattgtttcct-ttttccaatatttctcattcaagaaaacaacatatagggtttctt |
276 |
Q |
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| T |
38093037 |
ttgtccgaaggaatcccattgtttccttttttccaatatttctcattcaagaaaacaacatatagggtttctt |
38092965 |
T |
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Target: chr2; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 38093276 - 38093167
Alignment:
| Q |
1 |
ctatttaaacagtcactaattacaaacttaacgagctcactgtattt-ccaatctaaggaatatttcatgttaggaaatttctctcttttgcttctctaa |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38093276 |
ctatttaaacagtcactaattacaaacttaacgagctcactgttttttccaatctaaggaatatttcatgttaggaaatttgtctcttttgcttctctaa |
38093177 |
T |
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| Q |
100 |
ttctctttgc |
109 |
Q |
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| T |
38093176 |
ttctctttgc |
38093167 |
T |
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