View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12552_low_20 (Length: 240)
Name: NF12552_low_20
Description: NF12552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12552_low_20 |
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| [»] scaffold0071 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 29165892 - 29165673
Alignment:
| Q |
1 |
cttgtattgcttatacaaggacctctcaaaggcttagtgaaaacatctacaaattgatcatttgaaccaacaaagttagtaatgatgtctctgaaaaata |
100 |
Q |
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| T |
29165892 |
cttgtattgcttatacaaggacctctcaaaggcttagtgaaa-catctagaaattgatcatttgaaccaacgaagttagtgatgatgtctctgaaaa-ta |
29165795 |
T |
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| Q |
101 |
ttttcttgaattaaattacggtatctcataatataattggttctctcacaaaatactgaatttgaggttatattcaaatgccgtggttgtcaccgcactt |
200 |
Q |
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| T |
29165794 |
ttttcttgaatgaaattacagtatctcaaagtatagttggttctctcacaaaatactgaatttgaggatatattcaaa-gtcgtggttgtcaccgcactt |
29165696 |
T |
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| Q |
201 |
attgctatcattgtagccatatt |
223 |
Q |
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| T |
29165695 |
attgctatcattattgccatatt |
29165673 |
T |
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Target: scaffold0071 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0071
Description:
Target: scaffold0071; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 56537 - 56490
Alignment:
| Q |
33 |
cttagtgaaaacatctacaaattgatcatttgaaccaacaaagttagt |
80 |
Q |
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| T |
56537 |
cttagtgaaaacatctgtcaattgatcatttgaaccaacaaagctagt |
56490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 994621 - 994658
Alignment:
| Q |
54 |
ttgatcatttgaaccaacaaagttagtaatgatgtctc |
91 |
Q |
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| T |
994621 |
ttgatcatttgaactaacaaagctagtaatgatgtctc |
994658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 49931859 - 49931818
Alignment:
| Q |
21 |
acctctcaaaggcttagtgaaaacatctacaaattgatcatt |
62 |
Q |
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| T |
49931859 |
acctctcaaaggtttagtgaagacatctaccaattgatcatt |
49931818 |
T |
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