View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12552_low_5 (Length: 474)
Name: NF12552_low_5
Description: NF12552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12552_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 148 - 455
Target Start/End: Original strand, 353996 - 354303
Alignment:
| Q |
148 |
tgtgatgtttgtttttgaaggttaagtttgccactataacaaagaagcttgatcaaaagactcagaaactcggacccgcagttggttatgtctgatctgt |
247 |
Q |
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| T |
353996 |
tgtgatgtttgtttttgaaggttaagtttgccactataacaaagaagcttgatcagaagactcagaaactcggacccgcagttggttatgtctgatctat |
354095 |
T |
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| Q |
248 |
tgaaggttgaagggaaggagacaagtgaaattcatacattatgtaactgtaaagtagagaattagctttattctttccctctattactccataattgtga |
347 |
Q |
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| T |
354096 |
tgaaggttgaagggaaggagacaagtgaaattcatacattatgtaactgtaaagtagagaattagctttattctttccctctattactccataattgtga |
354195 |
T |
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| Q |
348 |
tcattgctggagcagtgttatggattcttcaacgcataacaaatgatgagtttcagttgtctccatagaaacatgtccaaatagtgttgagtcattgtgt |
447 |
Q |
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| T |
354196 |
tcattgctggagcagtgttatggattcttcaatgcataacaaatgatgagtttcagttgtctccatagaaacatgtccaaatagtgttgagtcattgtgt |
354295 |
T |
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| Q |
448 |
gtgtttgt |
455 |
Q |
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|||||||| |
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| T |
354296 |
gtgtttgt |
354303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 342 - 392
Target Start/End: Original strand, 10580612 - 10580662
Alignment:
| Q |
342 |
ttgtgatcattgctggagcagtgttatggattcttcaacgcataacaaatg |
392 |
Q |
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|||| ||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
10580612 |
ttgttatcattgttggagcagtgtcatggattcttcaacgcataacaaatg |
10580662 |
T |
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