View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12552_low_6 (Length: 449)
Name: NF12552_low_6
Description: NF12552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12552_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 4315649 - 4315213
Alignment:
| Q |
1 |
ttcaactcaccggtgaactctgtgttccggtaagtaataatgtcactaattcagcttaatttaaccgtaattgaagataattgaagttcaatttcgagtt |
100 |
Q |
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| T |
4315649 |
ttcaactcaccggtgaactctgtgttccggtaagtaataatgtcactaattcagcttaatttaaccgtaattgaagataattcaagttcaatttcgagtt |
4315550 |
T |
|
| Q |
101 |
tagttcttaataatttcatcaattatgaaactgaatttgaatattttcttcacagtatgatgatatggcggaactggaatggctttcgaatttcgtggaa |
200 |
Q |
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| T |
4315549 |
tagttcttaataatttcatcaattatgaaactgaatttgaatattttcttcacagtatgatgatatggcggaactggaatggctttcgaatttcgtggaa |
4315450 |
T |
|
| Q |
201 |
gattcatactccgctgaagaagaattgaaaacattgcaacttctctccggcgccggtgcggttaaaccgcaaacaccggaatcttcatcttccaccgaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4315449 |
gattcatactccgctgaagaagaattgaaaacattgcaacttctctccggcgccggtgcggttaaaccgcaaacaccggaatcttcatcttccaccgaca |
4315350 |
T |
|
| Q |
301 |
cacttccgtcattttccactgacgaaaccgctcgtaacgcttcatttctccgtccagaaacacctctaccaggaaaagcacgtagcaaacgctcacgcgc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4315349 |
cacttccgtcattttccactgacgaaaccgctcgtaacgcttcatttctccgtccagaaacacctctaccaggaaaagcacgtagcaaacgctcacgcgc |
4315250 |
T |
|
| Q |
401 |
tgcacctggcgactggtccacgcgcctacttcatctc |
437 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
4315249 |
tgcacctggcgactggtccacgcgcctacttcatctc |
4315213 |
T |
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