View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12552_low_9 (Length: 378)
Name: NF12552_low_9
Description: NF12552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12552_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 146 - 350
Target Start/End: Original strand, 16082828 - 16083021
Alignment:
| Q |
146 |
aaatttgcagtaggtgcctttgaagcttacttaagtcttccataaatgttatgggatcaacaacaaaaatgaaagtgagcatacctttattgatggcaat |
245 |
Q |
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| T |
16082828 |
aaatttgcagtaggtacctttgaagctta----agtcttccataaatgttatgggatcaacaacaataatgaaagtgagcatacctttattgatggcaat |
16082923 |
T |
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| Q |
246 |
ctaattactggaaagaacaagcaacgctgtaacctgcgagcttcattgtgacttgtgaggcttgtgctgactgctgacgcctgttcatggagacagtagg |
345 |
Q |
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| T |
16082924 |
ctaattaatggaattaacgagcaacactataacttgcgagcttcattgtgacttgtgaggcttg-------tgctgacgcctgttcacggagacagtagg |
16083016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 134
Target Start/End: Original strand, 16079944 - 16080058
Alignment:
| Q |
20 |
taaaatccatatacttgtcttcataaattgactatgtttcatcaaggcaataatctgtatcacagtttatccaagtgcaatattaataccttccatagat |
119 |
Q |
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| T |
16079944 |
taaaatccatatgcttgtcttcataaattgactatgtttcaccaaggcaataatctatatcaaagtttatccaagtgcaatattaatacctcccataaat |
16080043 |
T |
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| Q |
120 |
gtttttactacttca |
134 |
Q |
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| T |
16080044 |
gttttcactacttca |
16080058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 134
Target Start/End: Original strand, 16082614 - 16082686
Alignment:
| Q |
62 |
caaggcaataatctgtatcacagtttatccaagtgcaatattaataccttccatagatgtttttactacttca |
134 |
Q |
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| T |
16082614 |
caaggcaataatctatatcaaagtttatccaagtgcaatattaatacctcccataaatgttttcactacttca |
16082686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 15214717 - 15214828
Alignment:
| Q |
20 |
taaaatccatatacttgtcttcataaattgactatgtttcatcaaggcaataatctgtatcacagtttatccaagtgcaatattaataccttccatagat |
119 |
Q |
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| T |
15214717 |
taaaatccatatacttgtcttcataaattgactatgtttcaccaaggcaataatctatatcaaagtttatccaagtgcaatattaatacctcccataaat |
15214816 |
T |
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| Q |
120 |
gtttttactact |
131 |
Q |
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| T |
15214817 |
gttttcactact |
15214828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 15214970 - 15215041
Alignment:
| Q |
136 |
aaaaaatactaaatttgcagtaggtgcctttgaagcttacttaagtcttccataaatgttatgggatcaacaacaa |
211 |
Q |
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| T |
15214970 |
aaaaaatactaaatttgcagtaggtacctttgaag----cttaattcttccataaatgttatgggatcaacaacaa |
15215041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 6200039 - 6199925
Alignment:
| Q |
20 |
taaaatccatatacttgtcttcataaattgactatgtttcatcaaggcaataatctgtatcacagtttatccaagtgcaatattaataccttccatagat |
119 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| || |
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| T |
6200039 |
taaaattcatatacttgtcttcataaattgactatgtttcaccaaggcaataatctatatcaaagtttatccaagtgcaatattaatacctcccataaat |
6199940 |
T |
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| Q |
120 |
gtttttactacttca |
134 |
Q |
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| T |
6199939 |
gttttcactacttca |
6199925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 6199788 - 6199750
Alignment:
| Q |
136 |
aaaaaatactaaatttgcagtaggtgcctttgaagctta |
174 |
Q |
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| T |
6199788 |
aaaaaatactaaatttgcagtaggtacctttgaagctta |
6199750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 9067332 - 9067295
Alignment:
| Q |
20 |
taaaatccatatacttgtcttcataaattgactatgtt |
57 |
Q |
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| T |
9067332 |
taaaatccatatacttgtcttgataaattgactatgtt |
9067295 |
T |
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