View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12553_high_1 (Length: 383)
Name: NF12553_high_1
Description: NF12553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12553_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 4 - 366
Target Start/End: Complemental strand, 33555847 - 33555495
Alignment:
| Q |
4 |
ggagaattcaaatttgattcttagatgaaataatttttt-atgacattttacttatctcatatataactccatattttctttgggaagggaagacagccn |
102 |
Q |
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| T |
33555847 |
ggagaatccaaatttggttcttagatgaaataatttttttatgagactttacttatctcataaataactccatattttctttgggaagggaagacagcca |
33555748 |
T |
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| Q |
103 |
nnnnnnccatagtaattaggtaaataatgttggataaattatccacaaccaactgattaatatcagctagccacgtgtacttcactaccaagtaaaacag |
202 |
Q |
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| T |
33555747 |
--------aaagaaaca---taaataatgttggataaattatccacaaccaactaattaatatcagctagccacgtgtacttcactaccaagtaaaacag |
33555659 |
T |
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| Q |
203 |
ctacactcgtctaccttttgctttgataaaaataaaaataagttttcacaatccaatggtcaatcaaaatatgttcataaatcaagtttaaatttcgaga |
302 |
Q |
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| T |
33555658 |
ctacactcgtctaccttttgctttgataaaaataaaaataagttttcacaatccaatggtcaatcaagatatgttcataaatcaagttcaaatttcgaga |
33555559 |
T |
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| Q |
303 |
aacaattctcgtttagactttagttacatctcttttgaatcctacatttattttctggtggttg |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33555558 |
aacaattctcgtttagactttagttacatctcttttgaatcctacatttattttttggtggttg |
33555495 |
T |
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