View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12553_high_3 (Length: 324)
Name: NF12553_high_3
Description: NF12553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12553_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 12 - 308
Target Start/End: Complemental strand, 3590960 - 3590663
Alignment:
| Q |
12 |
ataggccattgatagtgctccaagtgtttttgctgtaaaaggaaagttgatgtgcatgatactaaaataattttaagtacatcatacttggccaatggcc |
111 |
Q |
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| T |
3590960 |
ataggccattgatagtgctccaagtgtttttgctgtaaaaggaaagttgatgtgcatgatactaaaataattttaagtacatcatacttggccaatggcc |
3590861 |
T |
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| Q |
112 |
accaatacaaacacaaagttggcaaaaaagacgacaagtacacaaagggctggtttttctaaatggattaacatgacattaggggaaagggaagggtggt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3590860 |
accaatacaaacacaaagttggcaaaaaagacgacaagtacacaaaaggctggtttttctaaatggattaacatgacattaggggaaagggaagggtggt |
3590761 |
T |
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| Q |
212 |
aatagtggggtc-tagattctcatcaaggttaaaaacagttggcaacacatggtttttcttgtgggacactgagaaagaatggatgtagtgtagtggt |
308 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3590760 |
aatagtggggccttagattctcatcaaggttaaaaacagttggcaacacatggtttttcttgtgggacactgagaaagaatggatgtagtgtagtggt |
3590663 |
T |
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