View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12553_high_4 (Length: 306)
Name: NF12553_high_4
Description: NF12553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12553_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 23 - 293
Target Start/End: Complemental strand, 16921949 - 16921672
Alignment:
| Q |
23 |
accacttatcaaattatcaaagttgaannnnnnnaatgagagctaaaaccacaaaaacaaacatggcaaagatcacaagcttcaaattcgatatatagtt |
122 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
16921949 |
accacttatcaaattatcaaagttggatttttt-aatgagagctaaaaccacaaaaacaaacatggtaaagatcacaagcttcaaattcgacatatagtt |
16921851 |
T |
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| Q |
123 |
ttcaaactttttcaactcctttatgcattgtagaaattat--------tttctgccttggtcctttcttcactctcttcaataaatttgtcaacaattgt |
214 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16921850 |
ttcaaactttttcagctcctttatgcattgtagaaattataaactcattttctgccctggtcctttcttcactctcttcaataaatttgtcaacaattgt |
16921751 |
T |
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| Q |
215 |
tttgaagcatgatatctggtcttgtagttctttaaactcagttgccaattctttctagacttctacacgaacttcttct |
293 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
16921750 |
tttgaagcatgatatctggtcttgtagctctttaaactcagttgccaattctttctggacttctacacgagcttcttct |
16921672 |
T |
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