View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12553_low_2 (Length: 366)
Name: NF12553_low_2
Description: NF12553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12553_low_2 |
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| [»] chr5 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 170 - 366
Target Start/End: Original strand, 11339290 - 11339485
Alignment:
| Q |
170 |
attggccattctgctcgacatcacctcacccaaatcactctaagtcaaatttttgtctccaccaccgcttcaaactgccaaagcgctgccactttatcat |
269 |
Q |
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| T |
11339290 |
attggccattctgctcgacatcacctcacccaaatcactctaagtcaaatttt-gtctccaccaccgcttcaaactgccaaagcgctgccgctttatcat |
11339388 |
T |
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| Q |
270 |
tcatggttgtttcacaatggtgcttttatagctcccaaacctgaaaacgacttcaagtggtatttttatttttcagaacaaaatttgacagtgttaa |
366 |
Q |
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| T |
11339389 |
tcatggttgtttcacaatggtgtttttatagctcccaaacctgaaaacaacttcaagtggtatttttatttttcagaacaaaatttgacagtattaa |
11339485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 265 - 366
Target Start/End: Original strand, 43378810 - 43378909
Alignment:
| Q |
265 |
atcattcatggttgtttcacaatggtgcttttatagctcccaaacctgaaaacgacttcaagtggtatttttatttttcagaacaaaatttgacagtgtt |
364 |
Q |
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| T |
43378810 |
atcattcatggttgttttacaatggtgtttttatagctccaaaaccataaaacaacttcaagtggta--tttatttttctgaacaaaatttgatagtgtt |
43378907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 265 - 366
Target Start/End: Original strand, 13207583 - 13207682
Alignment:
| Q |
265 |
atcattcatggttgtttcacaatggtgcttttatagctcccaaacctgaaaacgacttcaagtggtatttttatttttcagaacaaaatttgacagtgtt |
364 |
Q |
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| T |
13207583 |
atcattcatggttgttttacaatggtgtttttatagctccaaaaccataaaacaacttcaagtggta--tttatttttctgaacaaaatttgatagtgtt |
13207680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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