View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12553_low_4 (Length: 313)

Name: NF12553_low_4
Description: NF12553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12553_low_4
NF12553_low_4
[»] chr5 (4 HSPs)
chr5 (1-305)||(42435244-42435540)
chr5 (257-302)||(11417025-11417070)
chr5 (257-305)||(9498699-9498747)
chr5 (265-305)||(13786046-13786086)
[»] chr4 (4 HSPs)
chr4 (3-224)||(28293411-28293633)
chr4 (264-313)||(41444640-41444689)
chr4 (257-305)||(25483401-25483449)
chr4 (257-305)||(36608704-36608752)
[»] chr2 (4 HSPs)
chr2 (257-305)||(5543043-5543091)
chr2 (257-302)||(3594226-3594271)
chr2 (257-305)||(6421796-6421844)
chr2 (257-297)||(33731713-33731753)
[»] chr8 (3 HSPs)
chr8 (272-305)||(5274855-5274888)
chr8 (257-306)||(43274823-43274872)
chr8 (257-302)||(45121704-45121749)
[»] chr6 (2 HSPs)
chr6 (257-301)||(1950234-1950278)
chr6 (257-305)||(3058291-3058339)
[»] chr3 (3 HSPs)
chr3 (257-305)||(39935000-39935048)
chr3 (257-305)||(42584867-42584915)
chr3 (260-304)||(46546371-46546415)
[»] chr1 (2 HSPs)
chr1 (262-305)||(14318937-14318980)
chr1 (259-305)||(41759550-41759596)
[»] chr7 (3 HSPs)
chr7 (263-305)||(45433312-45433354)
chr7 (257-305)||(23422-23470)
chr7 (257-305)||(37533409-37533457)


Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 42435244 - 42435540
Alignment:
Q  1 taagatatttatttccattaaaaccacttaaaacattttttatgtgaatatttttccctcgaaaatgtctataaaatatttcttgatttgaataaatttt 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42435244 taagatatttatttccactaaaaccacttaaaacattttttatgtgtatatttttccctcgaaaatgtctataaaatatttcttgatttgaataaatttt 42435343  T
Q  101 tgaaatactcgtatttatatttctggaagtcttgtataaaacatttcaggattttgttacagatttcaaaaaacaccttgaaatcttaacatttgtaagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||     
T  42435344 tgaaatactcgtatttatatttctggaagtcttgtataaaacatttcaggatttt-ttacaaatttcaaaaaacaccttgaaatcttaacatttgtaagt 42435442  T
Q  201 a-gggctaataacactagtggaaaatgttgatttgcaacttgcaagtgtgaaataacaggatccataaatctattgccttaagattttgagtaagagtgt 299  Q
    | |||| |||||||||||||||||||||||||       ||||||||||||| ||| ||||||||| |||||||| ||||||| |||||| | |||||||    
T  42435443 aggggccaataacactagtggaaaatgttgat-------ttgcaagtgtgaagtaagaggatccat-aatctattaccttaaggttttgaatcagagtgt 42435534  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 11417070 - 11417025
Alignment:
Q  257 aggatccataaatctattgccttaagattttgagtaagagtgtgat 302  Q
    |||||||||||| | ||||||||||| ||||| |||||||||||||    
T  11417070 aggatccataaacccattgccttaaggttttgtgtaagagtgtgat 11417025  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 9498747 - 9498699
Alignment:
Q  257 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtc 305  Q
    |||| ||||||| | ||||||||||||||||| ||||||||||| ||||    
T  9498747 aggacccataaacccattgccttaagattttgggtaagagtgtggtgtc 9498699  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 305
Target Start/End: Complemental strand, 13786086 - 13786046
Alignment:
Q  265 taaatctattgccttaagattttgagtaagagtgtgatgtc 305  Q
    ||||||||||| ||||||||||||  |||||||||||||||    
T  13786086 taaatctattgtcttaagattttggataagagtgtgatgtc 13786046  T

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Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 28293633 - 28293411
Alignment:
Q  3 agatatttatttccattaaaaccacttaaaacattttttatgtgaatatttttccctcgaaaatgtctataaaatatttcttgatttgaataaatttttg 102  Q
    ||||||||||||||| ||||||||| |||||||||||||||||| |||||||| ||| | ||| ||||||||||| ||||| |||||||||||||||||     
T  28293633 agatatttatttccagtaaaaccacctaaaacattttttatgtgtatattttttcctaggaaaggtctataaaatgtttctcgatttgaataaatttttt 28293534  T
Q  103 aaatactcgtatttatatttctggaagtcttgtataaaacatttcaggattttgttacagatttcaaaaaacaccttgaaatcttaacatttgtaagca- 201  Q
    |||||||||||||||||||| || ||| |  ||||||||| |||||||||||| ||||| ||||||||||||||   |||||| |||||||||||||||     
T  28293533 aaatactcgtatttatatttatgaaagacccgtataaaacgtttcaggatttttttacaaatttcaaaaaacacaacgaaatcctaacatttgtaagcag 28293434  T
Q  202 gggctaataacactagtggaaaa 224  Q
    |||| ||||||||||||||||||    
T  28293433 gggccaataacactagtggaaaa 28293411  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 41444640 - 41444689
Alignment:
Q  264 ataaatctattgccttaagattttgagtaagagtgtgatgtccatctcat 313  Q
    |||||||||||| ||||||||||||||| |  |||||||||||| |||||    
T  41444640 ataaatctattgtcttaagattttgagttaaggtgtgatgtccaactcat 41444689  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 25483401 - 25483449
Alignment:
Q  257 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtc 305  Q
    |||||||||||| | ||||||||||| ||||| ||||||||||| ||||    
T  25483401 aggatccataaacccattgccttaaggttttgggtaagagtgtggtgtc 25483449  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 36608752 - 36608704
Alignment:
Q  257 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtc 305  Q
    |||||||||||||| |||| |||||| ||||| ||||||||||| ||||    
T  36608752 aggatccataaatccattgtcttaaggttttgggtaagagtgtggtgtc 36608704  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 5543091 - 5543043
Alignment:
Q  257 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtc 305  Q
    |||||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  5543091 aggatccataaacctattgccttaagattttgggtaagagtgtggtgtc 5543043  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 3594271 - 3594226
Alignment:
Q  257 aggatccataaatctattgccttaagattttgagtaagagtgtgat 302  Q
    ||||||||||||   ||||| |||||||||||||||||||||||||    
T  3594271 aggatccataaacacattgctttaagattttgagtaagagtgtgat 3594226  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 6421796 - 6421844
Alignment:
Q  257 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtc 305  Q
    |||| ||||||| ||||||||||||| ||||| ||||||||||| ||||    
T  6421796 aggacccataaacctattgccttaaggttttgggtaagagtgtggtgtc 6421844  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 33731713 - 33731753
Alignment:
Q  257 aggatccataaatctattgccttaagattttgagtaagagt 297  Q
    |||||||||||| ||||||||||||| ||||| ||||||||    
T  33731713 aggatccataaacctattgccttaaggttttgggtaagagt 33731753  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 272 - 305
Target Start/End: Original strand, 5274855 - 5274888
Alignment:
Q  272 attgccttaagattttgagtaagagtgtgatgtc 305  Q
    ||||||||||||||||||||||||||||||||||    
T  5274855 attgccttaagattttgagtaagagtgtgatgtc 5274888  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 43274872 - 43274823
Alignment:
Q  257 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtcc 306  Q
    |||| ||||||| |||||| |||||| ||||||||||||||||| |||||    
T  43274872 aggacccataaacctattgtcttaaggttttgagtaagagtgtggtgtcc 43274823  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 45121749 - 45121704
Alignment:
Q  257 aggatccataaatctattgccttaagattttgagtaagagtgtgat 302  Q
    |||||||||||| |||  |||||||| |||||||||||||||||||    
T  45121749 aggatccataaacctacagccttaaggttttgagtaagagtgtgat 45121704  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 1950278 - 1950234
Alignment:
Q  257 aggatccataaatctattgccttaagattttgagtaagagtgtga 301  Q
    |||| ||||||||||| ||||||||| ||||||||||||||||||    
T  1950278 aggagccataaatctaatgccttaaggttttgagtaagagtgtga 1950234  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 3058291 - 3058339
Alignment:
Q  257 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtc 305  Q
    |||||||||||| | ||||||||||| ||||| ||||||||||| ||||    
T  3058291 aggatccataaacccattgccttaaggttttgggtaagagtgtggtgtc 3058339  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 39935048 - 39935000
Alignment:
Q  257 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtc 305  Q
    |||||||||||| | ||||||||||  ||||||||||||||||||||||    
T  39935048 aggatccataaacccattgccttaaagttttgagtaagagtgtgatgtc 39935000  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 42584915 - 42584867
Alignment:
Q  257 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtc 305  Q
    |||||||||||| | |||| |||||||||||||| ||||||||| ||||    
T  42584915 aggatccataaaccaattgtcttaagattttgagaaagagtgtggtgtc 42584867  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 46546415 - 46546371
Alignment:
Q  260 atccataaatctattgccttaagattttgagtaagagtgtgatgt 304  Q
    ||||||||| | ||||||||||| ||||| |||||||||||||||    
T  46546415 atccataaacccattgccttaaggttttgtgtaagagtgtgatgt 46546371  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 262 - 305
Target Start/End: Original strand, 14318937 - 14318980
Alignment:
Q  262 ccataaatctattgccttaagattttgagtaagagtgtgatgtc 305  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||||    
T  14318937 ccataaatctattgccttaaggttttgggtaagagtgtggtgtc 14318980  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 41759550 - 41759596
Alignment:
Q  259 gatccataaatctattgccttaagattttgagtaagagtgtgatgtc 305  Q
    |||||||||||| ||||||||||| ||||| ||||||||||| ||||    
T  41759550 gatccataaatccattgccttaaggttttgggtaagagtgtggtgtc 41759596  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 305
Target Start/End: Original strand, 45433312 - 45433354
Alignment:
Q  263 cataaatctattgccttaagattttgagtaagagtgtgatgtc 305  Q
    |||||| ||||||||||||||||||| ||||||||||| ||||    
T  45433312 cataaacctattgccttaagattttgggtaagagtgtggtgtc 45433354  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 23470 - 23422
Alignment:
Q  257 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtc 305  Q
    |||| ||||||| ||||||||||||| ||||| ||||||||||| ||||    
T  23470 aggacccataaacctattgccttaaggttttgggtaagagtgtggtgtc 23422  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 37533457 - 37533409
Alignment:
Q  257 aggatccataaatctattgccttaagattttgagtaagagtgtgatgtc 305  Q
    |||| ||||||||| ||||||||||| ||||| ||||||||||| ||||    
T  37533457 aggacccataaatccattgccttaaggttttgggtaagagtgtggtgtc 37533409  T

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