View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12553_low_6 (Length: 267)
Name: NF12553_low_6
Description: NF12553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12553_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 130 - 259
Target Start/End: Complemental strand, 9820513 - 9820384
Alignment:
| Q |
130 |
ggtaagtttatatttgttagtgaaacatacattttgaacccatactgtcattactttactgtgagttaagttgatctttgtggtagaaatatgtctgatt |
229 |
Q |
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| T |
9820513 |
ggtaagtttatatttgttagtgaaacatacattttgaacccatactgtcattactttactgtgagttaagttgatctttttggtagaaatatgtctgatt |
9820414 |
T |
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| Q |
230 |
ctaagatcattgttgcattttatctctgct |
259 |
Q |
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| T |
9820413 |
ctaagatcattgttgcattttatctttgct |
9820384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 9821255 - 9821130
Alignment:
| Q |
1 |
tagtattttactttactagttgacttcttatgagttgatgtgaattttgaacaaatcaggctagctgcattaagctggaatggtgaaggttcttttgtat |
100 |
Q |
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| T |
9821255 |
tagtagtttactttactagttgacttcttatgagttgatgtgaattttgaacaaatcaggctagctgcattaagctggaatggtgaaggttctttcgtat |
9821156 |
T |
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| Q |
101 |
ttacgtcaagcagtgctccatatgat |
126 |
Q |
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| T |
9821155 |
ttacgtcaagcagtgctccatatgat |
9821130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 130 - 254
Target Start/End: Complemental strand, 38874145 - 38874021
Alignment:
| Q |
130 |
ggtaagtttatatttgttagtgaaacatacattttgaacccatactgtcattactttactgtgagttaagttgatctttgtggtagaaatatgtctgatt |
229 |
Q |
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||||||||||||||| |||||||||||||||| |||||| ||||||||||||||| | |||||||| ||||||||||||||||||||||| || ||||| |
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| T |
38874145 |
ggtaagtttatatttcttagtgaaacatacatcttgaacttatactgtcattacttcattgtgagttgagttgatctttgtggtagaaatacgtatgatt |
38874046 |
T |
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| Q |
230 |
ctaagatcattgttgcattttatct |
254 |
Q |
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| T |
38874045 |
ctgagatcattgttgcattttatct |
38874021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 38875481 - 38875382
Alignment:
| Q |
24 |
cttcttatgagttgatgtgaattttgaacaaatcaggctagctgcattaagctggaatggtgaaggttcttttgtatttacgtcaagcagtgctccatat |
123 |
Q |
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| T |
38875481 |
cttcttatgagttg---tgaattttcgacaaatcaggctagctgcattaagctggaatggtggaggttctttcatatttacttcaagtagtgctccatat |
38875385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 38693599 - 38693718
Alignment:
| Q |
8 |
ttactttactagttgac-ttcttatgagttgatgtgaattttgaacaaatcaggctagctgcattaagctggaatggtgaaggttcttttgtatttacgt |
106 |
Q |
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|||||||||||||| | ||||||||||||||||||| |||| || ||| |||| ||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
38693599 |
ttactttactagttttccttcttatgagttgatgtgatttttcaaaaaaccaggttagctgctttaagctggaatggtgaaggttcttttgcatttacgt |
38693698 |
T |
|
| Q |
107 |
caagcagtgctccatatgat |
126 |
Q |
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| T |
38693699 |
caagcagtgcttcatatgat |
38693718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 253
Target Start/End: Original strand, 38694151 - 38694179
Alignment:
| Q |
225 |
tgattctaagatcattgttgcattttatc |
253 |
Q |
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| T |
38694151 |
tgattctaagatcattgttgcattttatc |
38694179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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