View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12554_high_1 (Length: 272)

Name: NF12554_high_1
Description: NF12554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12554_high_1
NF12554_high_1
[»] chr4 (7 HSPs)
chr4 (1-231)||(4337083-4337313)
chr4 (1-231)||(4319177-4319416)
chr4 (12-218)||(4122538-4122747)
chr4 (1-117)||(4132616-4132729)
chr4 (10-230)||(4346553-4346779)
chr4 (167-224)||(4132515-4132572)
chr4 (10-117)||(4362742-4362849)
[»] chr6 (7 HSPs)
chr6 (1-117)||(5065447-5065563)
chr6 (2-112)||(5253715-5253825)
chr6 (1-117)||(5126627-5126743)
chr6 (11-117)||(5177930-5178036)
chr6 (11-117)||(5279755-5279861)
chr6 (1-117)||(5346210-5346326)
chr6 (11-117)||(5688901-5689007)
[»] chr7 (1 HSPs)
chr7 (1-117)||(36212919-36213035)
[»] chr3 (2 HSPs)
chr3 (1-105)||(47985403-47985507)
chr3 (1-105)||(48003977-48004081)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 4337083 - 4337313
Alignment:
Q  1 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 100  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337083 tgaggagtggcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 4337182  T
Q  101 tatctcatatatcatgacgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctgccaagagga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337183 tatctcatatatcatgacgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctgccaagagga 4337282  T
Q  201 tctctcttcaagtagagcctgcagatgattt 231  Q
    |||||||||||||||||||||||||||||||    
T  4337283 tctctcttcaagtagagcctgcagatgattt 4337313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 4319416 - 4319177
Alignment:
Q  1 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 100  Q
    |||||||  ||||||||| ||| ||||||||||||||||||| || || ||||||||||| ||||||||||||||||  |||||||||| |||| |||||    
T  4319416 tgaggagtggcagagagttgtaacaaatatggaacctggtgacaaggtggagattgttgtcgtttttgggaacagtttcattgtgatgaagacagcagtt 4319317  T
Q  101 tatctcatatatcatga---------cgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctg 191  Q
    |||||||||||| ||||         ||||| ||| |||||||||||| |||||||| |||||||||| ||||| |  |||||| |||||||||||||||    
T  4319316 tatctcatatatgatgaaccagtcgtcgaaatattggagcaatgtcatacaccagataagaatgttcttgttgatatcggtgatgaaaatgaatgtgctg 4319217  T
Q  192 ccaagaggatctctcttcaagtagagcctgcagatgattt 231  Q
    ||| |||||||||||  |||||||||||| ||||||||||    
T  4319216 ccatgaggatctctcgccaagtagagcctacagatgattt 4319177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 218
Target Start/End: Complemental strand, 4122747 - 4122538
Alignment:
Q  12 agagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcatata 111  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||  |||||||||| |||| ||||||||||||||||    
T  4122747 agagagtggtatcaaatatggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatata 4122648  T
Q  112 tcatga---------cgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctgccaagaggatc 202  Q
    | ||||          |||||| | |||||||| ||||||||| || ||||||||   ||||   |||||| | |||||||||| |||||||||||| ||    
T  4122647 tgatgaaccaatcggtgaaaaaatagagcaatgccatgcaccaaataagaatgtt---gttg---gtggtgctgaaaatgaatgcgctgccaagagggtc 4122554  T
Q  203 tctcttcaagtagagc 218  Q
    ||||| ||||||||||    
T  4122553 tctctgcaagtagagc 4122538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 4132729 - 4132616
Alignment:
Q  1 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 100  Q
    |||||||  ||||||||| ||||||||||||||||||||||| ||||||||||||||   |||||||||||||||||  |||||||||| |||| |||||    
T  4132729 tgaggagtggcagagagtagtatcaaatatggaacctggtgacaaagtcgagattgt---tgtttttgggaacagtttcattgtgatgaagacagcagtt 4132633  T
Q  101 tatctcatatatcatga 117  Q
    |||||||||||| ||||    
T  4132632 tatctcatatatgatga 4132616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 4346553 - 4346779
Alignment:
Q  10 gcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcata 109  Q
    ||||||| || |||| ||||||||||||||||| ||||| ||||| ||||||||| | | ||||| |   ||||||| || |||| ||||||||||||||    
T  4346553 gcagagaatgatatcgaatatggaacctggtgacaaagtggagatagttgttgttatggtgaacaatgtcattgtgacgaagacagcagtttatctcata 4346652  T
Q  110 tatca---------tgacgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctgccaagagga 200  Q
    ||| |         |||||||||| | || || ||| |||||||||||  ||||||| | ||||   |||||||| ||||||||||  || |||||||||    
T  4346653 tatgatgaaccaattgacgaaaaaatagaccattgtgatgcaccagatatgaatgttattgttg---gtggtgatgaaaatgaatgctcttccaagagga 4346749  T
Q  201 tctctcttcaagtagagcctgcagatgatt 230  Q
    | |||| |||||||||| |  |||||||||    
T  4346750 tttctcctcaagtagagtccacagatgatt 4346779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 4132572 - 4132515
Alignment:
Q  167 agtggtgataaaaatgaatgtgctgccaagaggatctctcttcaagtagagcctgcag 224  Q
    ||||||||| ||||||||||||||||||||||| || |||||||||||||||| ||||    
T  4132572 agtggtgatgaaaatgaatgtgctgccaagaggttcactcttcaagtagagcccgcag 4132515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 4362742 - 4362849
Alignment:
Q  10 gcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcata 109  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||| ||| ||||  | | ||||| |   ||||||| || |||| ||||||||||||||    
T  4362742 gcagagagtgatatcaaatatggaacctggtgacaaagtggagatagttattgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcata 4362841  T
Q  110 tatcatga 117  Q
    ||| ||||    
T  4362842 tatgatga 4362849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 5065563 - 5065447
Alignment:
Q  1 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 100  Q
    |||||||| ||||||||| ||||||| ||| ||||||||  ||||||| ||  ||||||||||||||| |||| |||   |||||| |||||||||||||    
T  5065563 tgaggaggggcagagagtagtatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagtt 5065464  T
Q  101 tatctcatatatcatga 117  Q
    |||||||||||| ||||    
T  5065463 tatctcatatatgatga 5065447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 5253715 - 5253825
Alignment:
Q  2 gaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagttt 101  Q
    ||||||| ||| |||||  ||| || ||| ||||||||  ||||||| ||| ||||||||||||||| ||||||||  ||||||| |||||| |||||||    
T  5253715 gaggaggggcaaagagtattattaagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagttt 5253814  T
Q  102 atctcatatat 112  Q
    |||||||||||    
T  5253815 atctcatatat 5253825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 5126743 - 5126627
Alignment:
Q  1 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 100  Q
    |||||||| | ||||||| ||||||| ||| ||| ||||| | ||||| ||||||||||||||||||  |||| |||  ||||||| || |||| | |||    
T  5126743 tgaggagggggagagagtagtatcaagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtt 5126644  T
Q  101 tatctcatatatcatga 117  Q
    |||||||||||| ||||    
T  5126643 tatctcatatatgatga 5126627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 5177930 - 5178036
Alignment:
Q  11 cagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcatat 110  Q
    |||||||| ||||||| ||| |||||| || | ||||| ||| ||||||||||||||| |||| |||  ||||||| ||  ||||||||||||||| |||    
T  5177930 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5178029  T
Q  111 atcatga 117  Q
    || ||||    
T  5178030 atgatga 5178036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 117
Target Start/End: Original strand, 5279755 - 5279861
Alignment:
Q  11 cagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcatat 110  Q
    |||||||| ||||||| ||| |||||| || | ||||| ||| ||||||||||||||| |||| |||  ||||||| ||  ||||||||||||||| |||    
T  5279755 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5279854  T
Q  111 atcatga 117  Q
    || ||||    
T  5279855 atgatga 5279861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 5346210 - 5346326
Alignment:
Q  1 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 100  Q
    ||||||||  |||||||| ||||||| ||| ||||||||| | ||||| ||| |||| |||||| ||| |||  |||  ||||||| || |||| || ||    
T  5346210 tgaggagggccagagagttgtatcaagtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatt 5346309  T
Q  101 tatctcatatatcatga 117  Q
    |||||||||||| ||||    
T  5346310 tatctcatatatgatga 5346326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 5689007 - 5688901
Alignment:
Q  11 cagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtttatctcatat 110  Q
    |||||||| ||||||| ||| |||||| || | ||||| ||| |||||  |||||||| |||| |||  ||||||| ||  ||||||||||||||| |||    
T  5689007 cagagagtagtatcaagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtat 5688908  T
Q  111 atcatga 117  Q
    || ||||    
T  5688907 atgatga 5688901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 36213035 - 36212919
Alignment:
Q  1 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 100  Q
    |||||||| ||||||| | ||||||| ||| ||||||||||||||| | ||| ||||||||||||||| ||||| ||  ||||||| || |||| |  ||    
T  36213035 tgaggaggggcagagattagtatcaagtatagaacctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgatt 36212936  T
Q  101 tatctcatatatcatga 117  Q
    |||||||| ||| ||||    
T  36212935 tatctcatttatgatga 36212919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 47985507 - 47985403
Alignment:
Q  1 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 100  Q
    |||||||| | ||||||| ||||||| ||| ||||| ||| | ||||| ||| | ||||||||||||| |||  |||  ||||||| ||||| | |||||    
T  47985507 tgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 47985408  T
Q  101 tatct 105  Q
    |||||    
T  47985407 tatct 47985403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 48004081 - 48003977
Alignment:
Q  1 tgaggaggagcagagagtggtatcaaatatggaacctggtgataaagtcgagattgttgttgtttttgggaacagttatattgtgatgaggacaacagtt 100  Q
    |||||||| | ||||||| ||||||| ||| ||||| ||| | ||||| ||| | ||||||||||||| |||  |||  ||||||| ||||| | |||||    
T  48004081 tgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattgtgaagaggatagcagtt 48003982  T
Q  101 tatct 105  Q
    |||||    
T  48003981 tatct 48003977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University