View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12554_high_2 (Length: 232)

Name: NF12554_high_2
Description: NF12554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12554_high_2
NF12554_high_2
[»] chr6 (2 HSPs)
chr6 (13-216)||(4183683-4183886)
chr6 (14-216)||(4744523-4744725)
[»] chr1 (8 HSPs)
chr1 (36-192)||(51382140-51382296)
chr1 (29-216)||(51857778-51857965)
chr1 (34-150)||(51763628-51763744)
chr1 (29-192)||(51781992-51782155)
chr1 (41-172)||(51221896-51222027)
chr1 (29-192)||(51831605-51831768)
chr1 (29-156)||(51828985-51829113)
chr1 (62-142)||(25611721-25611801)
[»] scaffold0015 (1 HSPs)
scaffold0015 (95-183)||(41141-41229)
[»] chr3 (3 HSPs)
chr3 (71-142)||(955600-955668)
chr3 (97-141)||(1941330-1941374)
chr3 (101-138)||(803982-804019)
[»] chr7 (1 HSPs)
chr7 (63-156)||(1421900-1421993)


Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 4183683 - 4183886
Alignment:
Q  13 agcagagactaagattaggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4183683 agcagagactaagattaggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccag 4183782  T
Q  113 gacttgcaaacgcaacggagttgaaggaggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaagtaacggaggagagttggtgg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4183783 gacttgcaaacgcaacggagttgaaggaggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaagtaacggaggagagttagtgg 4183882  T
Q  213 gagg 216  Q
    ||||    
T  4183883 gagg 4183886  T

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Target: chr6; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 4744523 - 4744725
Alignment:
Q  14 gcagagactaagattaggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccagg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4744523 gcagagactaagattaggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaatt-cagg 4744621  T
Q  114 acttgcaaacgcaacggagttgaagga-ggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaagtaacggaggagagttggtgg 212  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4744622 acttgcaaacgcaacggagttgaaggagggtgtttcacagggagacagcagaggatttctgccacaagatcgaatggaagtaacggaggagagttagtgg 4744721  T
Q  213 gagg 216  Q
    ||||    
T  4744722 gagg 4744725  T

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Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 36 - 192
Target Start/End: Original strand, 51382140 - 51382296
Alignment:
Q  36 ggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttg 135  Q
    ||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||    
T  51382140 ggcggtcgtggttggaggttgacaaacgaagttgcttcttggcgaaattggaatcatgagagataagataattccatgacttgcagacgcaacggagttg 51382239  T
Q  136 aaggaggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaag 192  Q
    ||||||||||||||| |||||   ||| |||||||||||||| |||||||| |||||    
T  51382240 aaggaggtgtttcacggggagcaggcacaggatttctgccaccagatcgaacggaag 51382296  T

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Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 216
Target Start/End: Complemental strand, 51857965 - 51857778
Alignment:
Q  29 aggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaac 128  Q
    |||| |||||||||| |||||||||| ||||| |||||||| ||| | | ||||| ||||||||| ||||||||||||||||| |||||||| | |||||    
T  51857965 aggtggtggcggtcgaggttggaggttgacaagcgaaggtgcttcatagtgaattcggaatcatgagagataagagaattccatgacttgcagatgcaac 51857866  T
Q  129 ggagttgaaggaggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaagtaacggaggagagttggtgggagg 216  Q
    ||||||||||||| | |||||| |||||   ||| || ||||||| ||| |||||||| | ||| || ||| |||| ||||| |||||    
T  51857865 ggagttgaaggagatttttcacggggagctggcacagaatttctgtcacgagatcgaacgaaagaaatggaagagaattggtaggagg 51857778  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 51763628 - 51763744
Alignment:
Q  34 gtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagt 133  Q
    ||||||||| |||||||| || |  || |||||||| ||||||| |||||  ||||||||  |||||||||||||||| |||||||| ||||||| ||||    
T  51763628 gtggcggtcatggttggaagttgggaagcgaaggtgcttcttggtgaattcagaatcatgacagataagagaattccatgacttgcagacgcaacagagt 51763727  T
Q  134 tgaaggaggtgtttcac 150  Q
    |||||||| ||||||||    
T  51763728 tgaaggagatgtttcac 51763744  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 192
Target Start/End: Complemental strand, 51782155 - 51781992
Alignment:
Q  29 aggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaac 128  Q
    |||| |||||| |||||||| ||||| ||||| |||| ||| || || |||||||| |||||||||||||||||||||||||| ||||| || || |  |    
T  51782155 aggtggtggcgatcgtggttagaggttgacaagcgaaagtgttttttagcgaatttagaatcatgggagataagagaattccatgacttacagacacggc 51782056  T
Q  129 ggagttgaaggaggtgtttcacagggagacag-cataggatttctgccacaagatcgaatggaag 192  Q
    |||||| || ||| |||||||| ||||| ||| || ||||||||||| || |||||||| |||||    
T  51782055 ggagtttaatgagatgtttcacggggag-cagacacaggatttctgcaaccagatcgaacggaag 51781992  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 172
Target Start/End: Original strand, 51221896 - 51222027
Alignment:
Q  41 tcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttgaagga 140  Q
    ||||||||| |||| ||||| ||||| || |||||||| || ||  ||||||| ||||||||||||||||| |||||||| | ||| |||||||||| ||    
T  51221896 tcgtggttgaaggttgacaagcgaagttgcttcttggcaaaatttaaatcatgagagataagagaattccatgacttgcagatgcagcggagttgaatga 51221995  T
Q  141 ggtgtttcacagggagacagcataggatttct 172  Q
    |||||||||| || || | ||| |||||||||    
T  51221996 ggtgtttcacgggcagccggcacaggatttct 51222027  T

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Target: chr1; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 192
Target Start/End: Complemental strand, 51831768 - 51831605
Alignment:
Q  29 aggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaac 128  Q
    |||| |||||||| | |||||||||| |||||  ||||||| ||| ||| ||| |||||||| |  ||||||||||| ||||| |||||||| || ||||    
T  51831768 aggtggtggcggtggaggttggaggttgacaactgaaggtgcttcctggtgaaattggaatcttcagagataagagagttccatgacttgcagacacaac 51831669  T
Q  129 ggagttgaaggaggtgtttcacagggagacagcataggatttctgccacaagatcgaatggaag 192  Q
    |||||||||||||   |||||| ||||| | ||| |||||| || |||| ||||| || |||||    
T  51831668 ggagttgaaggagaaatttcactgggagccggcacaggattactaccacgagatcaaacggaag 51831605  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 156
Target Start/End: Complemental strand, 51829113 - 51828985
Alignment:
Q  29 aggtcgtggcggtcgtggttggaggtggacaaacgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggactt-gcaaacgcaa 127  Q
    |||| |||||||| ||||| | |||| || ||  ||||||| ||| |||| || |||||||| |  | ||||||||||||||| ||||| ||| || |||    
T  51829113 aggtggtggcggttgtggtcgtaggttgagaagtgaaggtgtttcctggcaaaattggaatcctcagggataagagaattccatgactttgcagacacaa 51829014  T
Q  128 cggagttgaaggaggtgtttcacagggag 156  Q
    |||||||||| |||||||||||| |||||    
T  51829013 cggagttgaatgaggtgtttcacggggag 51828985  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 25611721 - 25611801
Alignment:
Q  62 cgaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttgaaggagg 142  Q
    |||||||| |||||| | || |||| |||||  || || ||||||||||| |||||||| ||||||| || ||||||||||    
T  25611721 cgaaggtgtttcttgacaaaattgggatcattcgatattagagaattccatgacttgcagacgcaacagaattgaaggagg 25611801  T

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Target: scaffold0015 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 41141 - 41229
Alignment:
Q  95 gagataagagaattccaggacttgcaaacgcaacggagttgaaggaggtgtttcacagggagacagcataggatttctgccacaagatc 183  Q
    ||||| ||||||||||| |||||||| |||||||||| ||| ||||||  |||||||||||| |  ||||||||||| |||||||||||    
T  41141 gagattagagaattccatgacttgcagacgcaacggaattgtaggaggaatttcacagggagtcgacataggatttcagccacaagatc 41229  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 955668 - 955600
Alignment:
Q  71 ttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttgaaggagg 142  Q
    ||||||||||| |||||||||   ||||||||||||||||| ||||| |||||||| || ||||||||||||    
T  955668 ttcttggcgaagttggaatca---gagataagagaattccaagacttacaaacgcatcgaagttgaaggagg 955600  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 1941330 - 1941374
Alignment:
Q  97 gataagagaattccaggacttgcaaacgcaacggagttgaaggag 141  Q
    ||||||||||||||| |||||||||||||| |||| |||||||||    
T  1941330 gataagagaattccacgacttgcaaacgcaccggaattgaaggag 1941374  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 803982 - 804019
Alignment:
Q  101 agagaattccaggacttgcaaacgcaacggagttgaag 138  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  803982 agagaattccatgacttgcaaacgcatcggagttgaag 804019  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 156
Target Start/End: Original strand, 1421900 - 1421993
Alignment:
Q  63 gaaggtggttcttggcgaatttggaatcatgggagataagagaattccaggacttgcaaacgcaacggagttgaaggaggtgtttcacagggag 156  Q
    ||||||| || ||||||||||||| |||||  ||||| ||| ||||||| ||||| || |||||||||| ||| ||||||  |||||| |||||    
T  1421900 gaaggtgttttttggcgaatttgggatcatttgagattagaaaattccacgacttacagacgcaacggaattgtaggaggaatttcactgggag 1421993  T

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