View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12554_low_1 (Length: 440)
Name: NF12554_low_1
Description: NF12554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12554_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 425
Target Start/End: Original strand, 43769896 - 43770305
Alignment:
| Q |
16 |
agagacaagaataatgttttggtgcatcctcttcaatctgaaccaaggggacaccattcaagttcatctggtgcgcctcgggttatcaagaagaagggcg |
115 |
Q |
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| T |
43769896 |
agagacaagaataatgttttggtgcctcctcgtcaatctgaaccaaggggacaccattcaagttcatctggtgcgcctcgggttatcaagaagaagggca |
43769995 |
T |
|
| Q |
116 |
gcaacaaacttcgacattgtgccagaaatttaaagcgtatagcgaggttatcgaagaaggatcaaaaagatgttctctgtgctttacaaaagactcatag |
215 |
Q |
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||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
43769996 |
gcagcaagcttcgacattgtgccagaaatttaaagcgtatagcgaggttatcggagaaggatcaaaaagatgttctatgtgctttacaaaagactcaaag |
43770095 |
T |
|
| Q |
216 |
acgacgtagaccggatccagaggtatcaaaggataaggtaaatggtgtcgaaaactcttctcaaagtggttctcaagcttcaattaataatgactggaaa |
315 |
Q |
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| T |
43770096 |
acgacgtagaccggatccagaggtatcaaaggataaggtaaatggtgtcgaaaactcttctcaaagtggttctcaagcttcagttaataatgactggaca |
43770195 |
T |
|
| Q |
316 |
aattggttagttttgcatggtagtgaccaggcaaaatcagatgatgttagagggtttggcaagattgtggggttgaagtttaaaggggacaaaaataata |
415 |
Q |
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| T |
43770196 |
aattggttagttttgcatggtagtgaccaggcgaaatcagatgatgttagagggtttggcaagattgtggggttgaagtttaaaggggacaaaaataata |
43770295 |
T |
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| Q |
416 |
tgtttgatgt |
425 |
Q |
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| T |
43770296 |
tgtttgatgt |
43770305 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 425
Target Start/End: Original strand, 7502243 - 7502337
Alignment:
| Q |
331 |
catggtagtgaccaggcaaaatcagatgatgttagagggtttggcaagattgtggggttgaagtttaaaggggacaaaaataatatgtttgatgt |
425 |
Q |
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| T |
7502243 |
catggtagtgataaggctaagtcagaggatgttcgaggtataggtaaggtggtgggtttgaattttaaaggggacaaaaacaatatgtttgatgt |
7502337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 425
Target Start/End: Complemental strand, 21582563 - 21582438
Alignment:
| Q |
300 |
taataatgactggaaaaattggttagttttgcatggtagtgaccaggcaaaatcagatgatgttagagggtttggcaagattgtggggttgaagtttaaa |
399 |
Q |
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||||||||||||| |||||||| ||| | ||||| | ||| ||| ||| ||||||||||| |||| | ||||||| ||||| ||||| ||| || |
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| T |
21582563 |
taataatgactggtctaattggttggttgttcatggcaatgataaggtaaaggcagatgatgttcgaggaataggcaagacagtgggtttgaattttgaa |
21582464 |
T |
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| Q |
400 |
ggggacaaaaataatatgtttgatgt |
425 |
Q |
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||| |||||||||||||||||||||| |
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| T |
21582463 |
gggaacaaaaataatatgtttgatgt |
21582438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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