View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12554_low_2 (Length: 358)

Name: NF12554_low_2
Description: NF12554
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12554_low_2
NF12554_low_2
[»] chr3 (3 HSPs)
chr3 (181-338)||(2782514-2782671)
chr3 (10-91)||(2782343-2782424)
chr3 (270-349)||(18973100-18973179)
[»] chr2 (1 HSPs)
chr2 (189-349)||(42048555-42048715)
[»] chr8 (2 HSPs)
chr8 (183-349)||(31180275-31180440)
chr8 (270-349)||(40530935-40531014)
[»] chr1 (1 HSPs)
chr1 (309-349)||(38564604-38564644)
[»] chr7 (2 HSPs)
chr7 (298-347)||(26231835-26231884)
chr7 (318-349)||(46262465-46262496)
[»] chr6 (1 HSPs)
chr6 (309-347)||(12128599-12128637)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 181 - 338
Target Start/End: Original strand, 2782514 - 2782671
Alignment:
Q  181 acgcaccccaacaacaacaccagagatccacagaaaccacacgcaaacacccgaagcacagtgatcccgtagcaacatcaagctacttgatgtaccgtct 280  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||| |||| ||||| |||||||||| |||||||| ||    
T  2782514 acgcaccccaacaacaccactagagatccacagaaaccacacgcaaacacccgaagcacagcgatctcgtaccaacagcaagctacttaatgtaccgcct 2782613  T
Q  281 ttcatcgtaaaggagataaaccaccaaccatccagagactggatccaccacaattgca 338  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  2782614 ttcatcgtaaaggagataaaccaccaaccatctaaagactggatccaccacaattgca 2782671  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 2782343 - 2782424
Alignment:
Q  10 acatcaccaagacagcaaaacaacatcaccaatccctacaaacaaaccctagaacgcgtagggaaaacatccaaaggccata 91  Q
    |||||||||||||| || |||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  2782343 acatcaccaagacaacataacatcatcaccaatccctacaaacaaaccccataacgcgtagggaaaacatccaaaggccata 2782424  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 349
Target Start/End: Complemental strand, 18973179 - 18973100
Alignment:
Q  270 atgtaccgtctttcatcgtaaaggagataaaccaccaaccatccagagactggatccaccacaattgcacgaccctttgc 349  Q
    |||||||||||||| |||   |||||| ||| | | || |||||| |||||||||||||||||| |||||||||||||||    
T  18973179 atgtaccgtctttcttcgcggaggagaaaaatctcaaatcatccaaagactggatccaccacaactgcacgaccctttgc 18973100  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 189 - 349
Target Start/End: Original strand, 42048555 - 42048715
Alignment:
Q  189 caacaacaacaccagagatccacagaaaccacacgcaaacacccgaagcacagtgatcccgtagcaacatcaagctacttgatgtaccgtctttcatcgt 288  Q
    |||||||| ||||||||||||| | ||||||||||| ||||||| | |||||  || ||||||  |||| |||| |||||   ||||| ||||||||||     
T  42048555 caacaacaccaccagagatccatataaaccacacgcgaacacccaacgcacaacgaccccgtacaaacaacaagatacttaccgtaccatctttcatcgc 42048654  T
Q  289 aaaggagataaaccaccaaccatccagagactggatccaccacaattgcacgaccctttgc 349  Q
     |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  42048655 gaaggagataaaccaccaaccatccagagactggatccaccacaactgcaagaccctttgc 42048715  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 183 - 349
Target Start/End: Original strand, 31180275 - 31180440
Alignment:
Q  183 gcaccccaacaacaacaccagagatccacagaaaccacacgcaaacacccgaagcacagtgatcccgtagcaacatcaagctacttgatgtaccgtcttt 282  Q
    ||||| || ||||| ||||| |||| |||| |||| || ||||||||||  ||||||| | |||||  | ||||| ||||||||||  |||||| |||||    
T  31180275 gcaccacaccaacaccaccaaagattcacataaac-actcgcaaacacctaaagcacaattatcccaaaccaacaacaagctacttattgtaccttcttt 31180373  T
Q  283 catcgtaaaggagataaaccaccaaccatccagagactggatccaccacaattgcacgaccctttgc 349  Q
    |  ||  ||||||| | ||||||||||||||| |||||| ||||||||||| |||||||||||||||    
T  31180374 cggcgcgaaggagagacaccaccaaccatccaaagactgaatccaccacaactgcacgaccctttgc 31180440  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 349
Target Start/End: Complemental strand, 40531014 - 40530935
Alignment:
Q  270 atgtaccgtctttcatcgtaaaggagataaaccaccaaccatccagagactggatccaccacaattgcacgaccctttgc 349  Q
    |||||||||||||| |||  ||||||| ||| | | || ||||||| ||||||||||||||||| |||||||||||||||    
T  40531014 atgtaccgtctttcttcgcgaaggagaaaaatctcaaatcatccagggactggatccaccacaactgcacgaccctttgc 40530935  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 38564644 - 38564604
Alignment:
Q  309 catccagagactggatccaccacaattgcacgaccctttgc 349  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  38564644 catccagagactggatccaccacaactgcacgaccctttgc 38564604  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 347
Target Start/End: Complemental strand, 26231884 - 26231835
Alignment:
Q  298 aaaccaccaaccatccagagactggatccaccacaattgcacgacccttt 347  Q
    ||||||||||||||||||| ||||||||||||||||   |||||||||||    
T  26231884 aaaccaccaaccatccagaaactggatccaccacaaccacacgacccttt 26231835  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 318 - 349
Target Start/End: Original strand, 46262465 - 46262496
Alignment:
Q  318 actggatccaccacaattgcacgaccctttgc 349  Q
    ||||||||||||||||||||||||||||||||    
T  46262465 actggatccaccacaattgcacgaccctttgc 46262496  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 347
Target Start/End: Complemental strand, 12128637 - 12128599
Alignment:
Q  309 catccagagactggatccaccacaattgcacgacccttt 347  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  12128637 catccagagactggatccaccacaactgcacggcccttt 12128599  T

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