View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12555_low_1 (Length: 407)

Name: NF12555_low_1
Description: NF12555
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12555_low_1
NF12555_low_1
[»] scaffold0019 (1 HSPs)
scaffold0019 (11-396)||(182869-183256)
[»] chr1 (10 HSPs)
chr1 (95-396)||(23632038-23632330)
chr1 (192-323)||(12786236-12786367)
chr1 (141-229)||(91207-91294)
chr1 (192-332)||(18513783-18513922)
chr1 (73-151)||(91795-91876)
chr1 (71-112)||(12484102-12484143)
chr1 (57-112)||(12786446-12786500)
chr1 (73-116)||(18513625-18513668)
chr1 (83-116)||(9131497-9131530)
chr1 (201-277)||(52274436-52274511)
[»] scaffold0088 (1 HSPs)
scaffold0088 (95-332)||(35356-35592)
[»] chr2 (6 HSPs)
chr2 (201-293)||(27386910-27387002)
chr2 (192-323)||(16093525-16093654)
chr2 (210-272)||(32623583-32623645)
chr2 (57-114)||(32623432-32623488)
chr2 (72-111)||(20263513-20263552)
chr2 (192-272)||(20263668-20263749)
[»] chr6 (8 HSPs)
chr6 (102-260)||(15285819-15285976)
chr6 (192-344)||(9548733-9548883)
chr6 (192-294)||(19892897-19892999)
chr6 (195-323)||(19768997-19769124)
chr6 (72-116)||(19565047-19565091)
chr6 (57-112)||(19893078-19893132)
chr6 (72-110)||(19893120-19893158)
chr6 (100-160)||(13285897-13285957)
[»] chr4 (10 HSPs)
chr4 (192-309)||(23974136-23974252)
chr4 (192-272)||(19611885-19611965)
chr4 (57-112)||(18873786-18873841)
chr4 (192-291)||(25126199-25126298)
chr4 (58-112)||(15706878-15706931)
chr4 (73-116)||(14645996-14646039)
chr4 (57-112)||(19611752-19611806)
chr4 (57-112)||(25126067-25126120)
chr4 (210-292)||(18552294-18552376)
chr4 (192-292)||(11153843-11153940)
[»] chr8 (5 HSPs)
chr8 (195-376)||(17290570-17290751)
chr8 (83-160)||(6465857-6465934)
chr8 (216-269)||(42147468-42147521)
chr8 (57-112)||(42147627-42147681)
chr8 (204-294)||(40391402-40391492)
[»] chr3 (11 HSPs)
chr3 (192-294)||(3593101-3593202)
chr3 (187-292)||(6460022-6460127)
chr3 (192-294)||(15777305-15777406)
chr3 (201-291)||(18705496-18705586)
chr3 (123-294)||(3262146-3262316)
chr3 (192-286)||(9733588-9733682)
chr3 (192-332)||(30993200-30993339)
chr3 (57-108)||(9733455-9733505)
chr3 (57-112)||(18705354-18705408)
chr3 (73-109)||(3290882-3290918)
chr3 (242-345)||(18534434-18534535)
[»] scaffold0281 (2 HSPs)
scaffold0281 (226-329)||(1839-1940)
scaffold0281 (58-112)||(2012-2065)
[»] chr7 (10 HSPs)
chr7 (192-323)||(18147568-18147698)
chr7 (102-219)||(22949172-22949289)
chr7 (57-112)||(3312845-3312900)
chr7 (196-299)||(11508678-11508781)
chr7 (204-299)||(32945370-32945463)
chr7 (71-112)||(34707314-34707355)
chr7 (72-111)||(11508515-11508554)
chr7 (57-112)||(11508541-11508595)
chr7 (201-294)||(33721260-33721354)
chr7 (72-114)||(33721489-33721531)
[»] chr5 (3 HSPs)
chr5 (195-294)||(39435924-39436023)
chr5 (58-112)||(21143764-21143817)
chr5 (245-323)||(39176441-39176519)
[»] scaffold0323 (1 HSPs)
scaffold0323 (186-345)||(16223-16383)
[»] scaffold0978 (1 HSPs)
scaffold0978 (57-112)||(3013-3067)
[»] scaffold0005 (1 HSPs)
scaffold0005 (73-116)||(171251-171294)


Alignment Details
Target: scaffold0019 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 11 - 396
Target Start/End: Complemental strand, 183256 - 182869
Alignment:
Q  11 aagcagagagatgtgtgaatagcaaaacagtgtagttnnnnnnnnn--gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaaca 108  Q
    |||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  183256 aagcagagagatgtgtgaatagcaaaacagtgtagttaaaaaaagaaagattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaaca 183157  T
Q  109 aacttagatgaggattataaatagatgagaacattagaaaaatagggttacaccgatcagagaaaagattagagaataaaaggaaactaggattgtggag 208  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||    
T  183156 aacttagatgatgattataaatagatgagaacattagaaaaatagggttacaccgatcagagaaaatattagagaacaaaaggaaactagggttgtggag 183057  T
Q  209 agaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctat 308  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  183056 agaagaggcaaggaggcatagggagaggaacgtagatagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggggggaaatttctat 182957  T
Q  309 ttagcatatgggttgcatgaacatgtggtagtgaaggatctttgcttgctttcatgatcttttgatgaatttatgttgtgatgtccat 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  182956 ttagcatatgggttgcatgaacatgtggtagtgaaggatctttgcttgctttcatgatcttttgatgaatttatcttgtgatgtccat 182869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 163; Significance: 6e-87; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 95 - 396
Target Start/End: Original strand, 23632038 - 23632330
Alignment:
Q  95 aaagattagtaacaaacttagatgaggattataaatagatgagaacattagaaaaatagggttacaccgatcagagaaaagattagagaataaaaggaaa 194  Q
    |||||||||||||||||||||      |||||||||||| ||||||||||||||| |||||||||| | |  |||||||||||||||||| ||||| |||    
T  23632038 aaagattagtaacaaacttagc-----attataaatagacgagaacattagaaaactagggttacaacaa--agagaaaagattagagaacaaaagaaaa 23632130  T
Q  195 ctaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaagg 294  Q
    ||||| |||| ||||||||||||||| |||||||   |||| ||||||||||||||||||||||||| || |||||||||||   |||||||||||||||    
T  23632131 ctagggttgttgagagaagaggcaagaaggcatactaagagaaacgtagagagagatttcaccgtaggaactcatcaaattcgaaaaactagaggtaagg 23632230  T
Q  295 agggaagtttctatttagcatatgggttgcatgaacatgtggtagtgaaggatctttgcttgctttcatgatcttttgatgaatttatgttgtgatgtcc 394  Q
     ||| |||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23632231 -ggggagtttctatttagcatatgggttgcatgaacacgtgggtgtgaaggatctttgcttgctttcatgatcttttgatgaatttat-ttgtgatgtcc 23632328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 192 - 323
Target Start/End: Complemental strand, 12786367 - 12786236
Alignment:
Q  192 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 291  Q
    |||||||| |||||||||||| |||||||| |||||||  ||| |||| |  |||||||||||||||||| || |||||||||||| |||||||||||||    
T  12786367 aaactagggttgtggagagaaaaggcaaggtggcatagaaagaagaacctgaagagagatttcaccgtaggaattcatcaaattctccaaactagaggta 12786268  T
Q  292 aggagggaagtttctatttagcatatgggttg 323  Q
    | | ||| ||| |||||| | |||| ||||||    
T  12786267 atggggggagtctctattcatcataagggttg 12786236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 229
Target Start/End: Complemental strand, 91294 - 91207
Alignment:
Q  141 attagaaaaatagggttacaccgatcagagaaaagattagagaataaaaggaaactaggattgtggagagaagaggcaaggaggcatag 229  Q
    |||||||||||||||||||| | | || |||||||||||||||  ||| | |||||||| |||||||||||||| ||||||||||||||    
T  91294 attagaaaaatagggttacaacaagcaaagaaaagattagagatcaaaggaaaactagggttgtggagagaaga-gcaaggaggcatag 91207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 332
Target Start/End: Original strand, 18513783 - 18513922
Alignment:
Q  192 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 291  Q
    |||||||| || |||||||||||||| | |||| |||| |||| |||| ||||||||||||| | | ||| |||||||||| |||   |||||| |||||    
T  18513783 aaactagggttatggagagaagaggccaagaggaatagtgagaagaacctagagagagattttaacataggaaatcatcaatttcgcaaaactaaaggta 18513882  T
Q  292 aggagggaagtttctatttagcatatgggttgcatgaacat 332  Q
    ||| ||||||| |||||| | |||| |||||| ||||||||    
T  18513883 agg-gggaagtctctattcaccataagggttgtatgaacat 18513922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 91876 - 91795
Alignment:
Q  73 agaggtacatatagtaatctgaaaagattagtaacaaacttagatg---aggattataaatagatgagaacattagaaaaat 151  Q
    |||||| || ||||||||||||||||||||||||||||||||| ||   | ||||||||||||||||||| |||| ||||||    
T  91876 agaggtgcagatagtaatctgaaaagattagtaacaaacttagctgaatatgattataaatagatgagaatattataaaaat 91795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 12484102 - 12484143
Alignment:
Q  71 ctagaggtacatatagtaatctgaaaagattagtaacaaact 112  Q
    |||||||| || ||||||||||||||||||||||||||||||    
T  12484102 ctagaggtgcagatagtaatctgaaaagattagtaacaaact 12484143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 12786500 - 12786446
Alignment:
Q  57 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 112  Q
    ||||||||||||||||||| | |||||||||||| | |||||||| ||||||||||    
T  12786500 gattagtaacaaacctagaag-acatatagtaatataaaaagattggtaacaaact 12786446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 18513625 - 18513668
Alignment:
Q  73 agaggtacatatagtaatctgaaaagattagtaacaaacttaga 116  Q
    |||||| || |||||||| |||||||||||||||||||||||||    
T  18513625 agaggtgcagatagtaatttgaaaagattagtaacaaacttaga 18513668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 9131497 - 9131530
Alignment:
Q  83 atagtaatctgaaaagattagtaacaaacttaga 116  Q
    |||||||| |||||||||||||||||||||||||    
T  9131497 atagtaatttgaaaagattagtaacaaacttaga 9131530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 52274511 - 52274436
Alignment:
Q  201 ttgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattct 277  Q
    |||||||||||| | |||||  |||||||  ||| |||| | |||||||||||||||||| ||| ||||||||||||    
T  52274511 ttgtggagagaaaaagcaagatggcatagaaagaagaactt-gagagagatttcaccgtaaaaattcatcaaattct 52274436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 95 - 332
Target Start/End: Original strand, 35356 - 35592
Alignment:
Q  95 aaagattagtaacaaacttagatgaggattataaatagatgagaacattagaaaaatagggttacaccgatcagagaaaagattagagaataaaaggaaa 194  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| | | |||| |||||||||||||| ||||| |||    
T  35356 aaagattagtaacaaacttaggtgatgattataaatagatgagaacattagaaaaataggattacaacaaacagaaaaaagattagagaacaaaagaaaa 35455  T
Q  195 ctaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaagg 294  Q
    ||||| |||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||| || |||||||||||  ||||||||||||||||    
T  35456 ctagggttgtggagagaaaaggcaagaaggcatagcaagaggaacgtagagagagatttcaccgtaggaactcatcaaattcgacaaactagaggtaagg 35555  T
Q  295 agggaagtttctatttagcatatgggttgcatgaacat 332  Q
     ||| ||| |||||| ||| || |||||| || |||||    
T  35556 -ggggagtctctattcagcgtaagggttgtatcaacat 35592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 201 - 293
Target Start/End: Original strand, 27386910 - 27387002
Alignment:
Q  201 ttgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaag 293  Q
    ||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||| || |||   ||||||||||||||    
T  27386910 ttgtggagagaagaggcaaggaggcatggcgagaagaacctagagagagatttcaccgtagaaaatcattaatttcgcaaaactagaggtaag 27387002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 192 - 323
Target Start/End: Complemental strand, 16093654 - 16093525
Alignment:
Q  192 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 291  Q
    |||||||| || ||||||||| |||||| || | |||||||||||||| |||||||||||||||| ||||||| ||||| | || |||||||||||||||    
T  16093654 aaactagggttatggagagaaaaggcaaagatgaatagcgagaggaacctagagagagatttcactgtagaaattcatc-acttttgcaaactagaggta 16093556  T
Q  292 aggagggaagtttctatttagcatatgggttg 323  Q
    | ||||| ||| |||||| | |||| ||||||    
T  16093555 a-gaggggagtctctattcaccataagggttg 16093525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 32623583 - 32623645
Alignment:
Q  210 gaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaa 272  Q
    |||||||||| |||| ||| ||||| |||  ||||||||||||||||||||||||||||||||    
T  32623583 gaagaggcaaagaggaataacgagaagaatctagagagagatttcaccgtagaaaatcatcaa 32623645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 32623432 - 32623488
Alignment:
Q  57 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaactta 114  Q
    ||||||||||||||||||| | |||||||||||||| ||||||||||| |||||||||    
T  32623432 gattagtaacaaacctagatg-acatatagtaatctaaaaagattagtgacaaactta 32623488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 20263513 - 20263552
Alignment:
Q  72 tagaggtacatatagtaatctgaaaagattagtaacaaac 111  Q
    |||||||||| |||||||| ||||||||||||||||||||    
T  20263513 tagaggtacaaatagtaatttgaaaagattagtaacaaac 20263552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 20263668 - 20263749
Alignment:
Q  192 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttc-accgtagaaaatcatcaa 272  Q
    |||||||| ||||||||| ||||| |||||||||| | ||||| |||  || ||||||||||| ||||||| || |||||||    
T  20263668 aaactagggttgtggagaaaagagtcaaggaggcacaccgagaagaatctaaagagagatttctaccgtaggaattcatcaa 20263749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 102 - 260
Target Start/End: Original strand, 15285819 - 15285976
Alignment:
Q  102 agtaacaaacttagatgaggattataaatagatgagaacattagaaaaatagggttacaccgatcagagaaaagattagagaataaaaggaaa-ctagga 200  Q
    |||||||||||||| | | ||||||||||||||||||||||||| |||||||||||||| | | || |||||| ||||||| || |||| ||| |||| |    
T  15285819 agtaacaaacttagcttatgattataaatagatgagaacattaggaaaatagggttacaacaaaca-agaaaatattagag-atcaaagaaaatctagta 15285916  T
Q  201 ttgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgta 260  Q
    |||||||||||||| |||| || |||||| |||| |||  | ||||||||||||||||||    
T  15285917 ttgtggagagaagacgcaaagaagcatagtgagaagaatctggagagagatttcaccgta 15285976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 192 - 344
Target Start/End: Complemental strand, 9548883 - 9548733
Alignment:
Q  192 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgc--aaactagagg 289  Q
    |||||||| ||||||||||||||| ||||||||||||||||||  ||||||||  ||||||||||||||| |||||||||| ||| ||  |||||||||     
T  9548883 aaactagggttgtggagagaagagacaaggaggcatagcgagaaaaacgtaga--gagatttcaccgtaggaaatcatcaatttc-gcaaaaactagaga 9548787  T
Q  290 taaggagggaagtttctatttagcatatgggttgcatgaacatgtggtagtgaag 344  Q
    ||||| ||| ||| ||| || | |||| |||||| |||| ||| |||||||||||    
T  9548786 taagg-ggggagtctctgttcatcataagggttgtatgatcatatggtagtgaag 9548733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 294
Target Start/End: Complemental strand, 19892999 - 19892897
Alignment:
Q  192 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 291  Q
    |||||||| ||||||||| ||||| |||| ||||| | ||||| |||  |||||||| |||||| |||||||| |||||||||||| | |||||||||||    
T  19892999 aaactagggttgtggagaaaagagtcaagcaggcacaccgagaagaatctagagagaaatttcatcgtagaaattcatcaaattctccgaactagaggta 19892900  T
Q  292 agg 294  Q
    |||    
T  19892899 agg 19892897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 195 - 323
Target Start/End: Original strand, 19768997 - 19769124
Alignment:
Q  195 ctaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaagg 294  Q
    ||||| ||||||||| ||||| || | ||||| | ||||| |||  ||||||||||||||||||||| || |||||||||||| | |||||||||||| |    
T  19768997 ctagggttgtggagaaaagagtcatg-aggcacaccgagaagaatctagagagagatttcaccgtaggaattcatcaaattcttcgaactagaggtaatg 19769095  T
Q  295 agggaagtttctatttagcatatgggttg 323  Q
     ||| ||| |||||| | |||| ||||||    
T  19769096 gggggagtctctattcatcataagggttg 19769124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 19565047 - 19565091
Alignment:
Q  72 tagaggtacatatagtaatctgaaaagattagtaacaaacttaga 116  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||    
T  19565047 tagaggtacaaatagtaatctgaaaagattagtaacaaacctaga 19565091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 19893132 - 19893078
Alignment:
Q  57 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 112  Q
    ||||||||||||| ||||||| |||||||||||||| |||||||| ||||||||||    
T  19893132 gattagtaacaaatctagagg-acatatagtaatctaaaaagattggtaacaaact 19893078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 19893158 - 19893120
Alignment:
Q  72 tagaggtacatatagtaatctgaaaagattagtaacaaa 110  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  19893158 tagaggtgcagatagtaatctgaaaagattagtaacaaa 19893120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 13285957 - 13285897
Alignment:
Q  100 ttagtaacaaacttagatgaggattataaatagatgagaacattagaaaaatagggttaca 160  Q
    |||| |||||||| || ||  |||||||||||||||||| ||||||| || ||||||||||    
T  13285957 ttagaaacaaactcagttggtgattataaatagatgagaccattagagaattagggttaca 13285897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 192 - 309
Target Start/End: Complemental strand, 23974252 - 23974136
Alignment:
Q  192 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 291  Q
    |||||||| || |||||||||||| ||| |||| ||||||||| |||| |||||| |||||||||||||| |||||||| ||||||||||||||||||||    
T  23974252 aaactagggttatggagagaagagacaaagaggaatagcgagaagaacctagagaaagatttcaccgtaggaaatcatc-aattctgcaaactagaggta 23974154  T
Q  292 aggagggaagtttctatt 309  Q
    | | ||| ||||| ||||    
T  23974153 atggggggagtttttatt 23974136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 19611885 - 19611965
Alignment:
Q  192 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaa 272  Q
    |||||||| |||||| ||||||||||||||||| ||||||||| |||| ||||||||||||||| |||||  |||||||||    
T  19611885 aaactagggttgtggggagaagaggcaaggagggatagcgagaagaacctagagagagatttcatcgtagggaatcatcaa 19611965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 18873841 - 18873786
Alignment:
Q  57 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  18873841 gattagtaacaaacttagaggtacatatagtaatctgaaaagattaataacaaact 18873786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 291
Target Start/End: Original strand, 25126199 - 25126298
Alignment:
Q  192 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 291  Q
    |||||||| || ||| |||||||||||| |||| ||||||||| |||| |||||||| |||| | ||||| |||||||||| |||   ||||||||||||    
T  25126199 aaactagggttatggtgagaagaggcaaagaggaatagcgagaagaacctagagagaaatttgaacgtaggaaatcatcaatttcgcaaaactagaggta 25126298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 15706931 - 15706878
Alignment:
Q  58 attagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 112  Q
    |||||||||||||||||||  |||||||||||| |||||||||| ||||||||||    
T  15706931 attagtaacaaacctagaga-acatatagtaatgtgaaaagatttgtaacaaact 15706878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 14646039 - 14645996
Alignment:
Q  73 agaggtacatatagtaatctgaaaagattagtaacaaacttaga 116  Q
    |||||| ||||||||||| |||||||||||||||||||| ||||    
T  14646039 agaggtgcatatagtaatttgaaaagattagtaacaaacctaga 14645996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 19611752 - 19611806
Alignment:
Q  57 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 112  Q
    ||||||||||||||||||||| |||||||  ||||| |||||||| ||||||||||    
T  19611752 gattagtaacaaacctagagg-acatatataaatctaaaaagattggtaacaaact 19611806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 25126067 - 25126120
Alignment:
Q  57 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 112  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||    
T  25126067 gattagtaacaaacctagagg-acatttagtaatctaaaaagatt-gtaacaaact 25126120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 18552294 - 18552376
Alignment:
Q  210 gaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaa 292  Q
    |||||||||||||||||||| |||| |||| | |||||| |||||| | ||| || ||||||||||  | |||||||| ||||    
T  18552294 gaagaggcaaggaggcatagtgagaagaacctggagagatatttcatcatagtaattcatcaaatttagtaaactagaagtaa 18552376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 292
Target Start/End: Complemental strand, 11153940 - 11153843
Alignment:
Q  192 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 291  Q
    |||||||| ||||||||| ||||| |||| ||||| | ||||| |||  ||||||||  ||||||||||  || |||||||||||| | |||||||||||    
T  11153940 aaactagggttgtggagaaaagagtcaag-aggcacaccgagaagaatctagagaga--tttcaccgtatgaattcatcaaattcttcgaactagaggta 11153844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 195 - 376
Target Start/End: Complemental strand, 17290751 - 17290570
Alignment:
Q  195 ctaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaagg 294  Q
    ||||| ||||||||||||||| |||||||| ||| ||||| |||| ||||||||||||| ||||||  |||| ||||| ||||  ||| |||||||||||    
T  17290751 ctagggttgtggagagaagagacaaggaggaataacgagaagaacctagagagagattttaccgtatgaaattatcaatttctcaaaattagaggtaagg 17290652  T
Q  295 agggaagtttctatttagcatatgggttgcatgaacatgt-ggtagtgaaggatctttgcttgctttcatgatcttttgatga 376  Q
     ||| ||| |||||| | |||| |||||| ||||| || | ||| ||||||| | |||| ||| |||||| || |||||||||    
T  17290651 -ggggagtctctattcaccataagggttgtatgaatatatgggttgtgaagggtttttgtttgttttcataattttttgatga 17290570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 6465934 - 6465857
Alignment:
Q  83 atagtaatctgaaaagattagtaacaaacttagatgaggattataaatagatgagaacattagaaaaatagggttaca 160  Q
    |||||||||| |||| ||||||||||||||||| |||  |||||||||||| ||||||||||||||| ||| ||||||    
T  6465934 atagtaatctaaaaatattagtaacaaacttagctgattattataaatagacgagaacattagaaaattagagttaca 6465857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 42147521 - 42147468
Alignment:
Q  216 gcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcat 269  Q
    ||||| ||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  42147521 gcaagaaggcatagcgagaagaacctagagagagatttcaccatagaaaatcat 42147468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 42147681 - 42147627
Alignment:
Q  57 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 112  Q
    |||||||||||||| |||||| |||||||||||||| |||||||| ||||||||||    
T  42147681 gattagtaacaaacatagagg-acatatagtaatctaaaaagattggtaacaaact 42147627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 294
Target Start/End: Complemental strand, 40391492 - 40391402
Alignment:
Q  204 tggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaagg 294  Q
    |||||||||||| ||| || | ||||||||| |||| || |||||||||||| | ||||||| |||||| |||   |||||||||||||||    
T  40391492 tggagagaagagacaaagatgaatagcgagaagaacctaaagagagatttcaacttagaaaaccatcaatttcgcaaaactagaggtaagg 40391402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 192 - 294
Target Start/End: Complemental strand, 3593202 - 3593101
Alignment:
Q  192 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 291  Q
    |||||| | |||||||||||||||||||||||| |||||||||  ||| ||  |||||||||| |||||| |||||||| ||||| ||||||||||||||    
T  3593202 aaactaaggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatttctccgtaggaaatcatc-aattcggcaaactagaggta 3593104  T
Q  292 agg 294  Q
    |||    
T  3593103 agg 3593101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 187 - 292
Target Start/End: Complemental strand, 6460127 - 6460022
Alignment:
Q  187 aaaggaaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactag 286  Q
    |||||||| |||| |||||||||||||||||||||||||||| ||||| | |  ||||||||||||||| ||||| |  |||||||||||||  || |||    
T  6460127 aaaggaaaatagggttgtggagagaagaggcaaggaggcataacgagaaggatctagagagagatttcatcgtaggatttcatcaaattctgttaattag 6460028  T
Q  287 aggtaa 292  Q
    ||||||    
T  6460027 aggtaa 6460022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 294
Target Start/End: Original strand, 15777305 - 15777406
Alignment:
Q  192 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 291  Q
    |||||||| || ||||||||| |||||| |||| ||||||||| |||| ||||||||||||||||||||| || | ||| | || |||||||||||||||    
T  15777305 aaactagggttatggagagaataggcaaagaggaatagcgagaagaacctagagagagatttcaccgtaggaatttatc-acttttgcaaactagaggta 15777403  T
Q  292 agg 294  Q
    |||    
T  15777404 agg 15777406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 201 - 291
Target Start/End: Original strand, 18705496 - 18705586
Alignment:
Q  201 ttgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 291  Q
    |||||||||||||||| |||||| ||||| |||| |||||||||||||||||||||| ||  |||||||||| |||   ||||||||||||    
T  18705496 ttgtggagagaagaggtaaggagacatagtgagaagaacgtagagagagatttcaccatatgaaatcatcaatttcgtaaaactagaggta 18705586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 294
Target Start/End: Original strand, 3262146 - 3262316
Alignment:
Q  123 ttataaatagatgagaacattagaaaaatagggttacaccgatcagagaaaa-gattagagaataaaaggaaactaggattgtggagagaagaggcaagg 221  Q
    ||||||||||| |||| ||||||| || |||||||||| | | || |||||| ||||||| ||| || |  || |||| ||||||||||||||| ||||     
T  3262146 ttataaatagaggagagcattagagaattagggttacaacaaacaaagaaaaagattaga-aatcaaggacaaatagggttgtggagagaagagacaaga 3262244  T
Q  222 aggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaagg 294  Q
    | ||||||||||  ||| |||||||||||||||| ||||| ||||||| | |||||  |||||| ||||||||    
T  3262245 aagcatagcgaggagaatgtagagagagatttcatcgtaggaaatcattagattctataaacta-aggtaagg 3262316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 286
Target Start/End: Original strand, 9733588 - 9733682
Alignment:
Q  192 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactag 286  Q
    |||||||| ||||||||| ||||| |||||||||| | ||||| |||  |||||||||||||||| |||| || |||||||||||| | ||||||    
T  9733588 aaactagggttgtggagaaaagagtcaaggaggcacaccgagaagaatctagagagagatttcacagtaggaattcatcaaattcttcgaactag 9733682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 332
Target Start/End: Original strand, 30993200 - 30993339
Alignment:
Q  192 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 291  Q
    |||||||| |||||||||||| |  ||||  | |||||  ||| |||| | |||||||| ||||| |||  || |||||||||||| |||||||||||||    
T  30993200 aaactagggttgtggagagaaaaaacaagatgacatagaaagaagaacctggagagagacttcactgtatgaattcatcaaattctccaaactagaggta 30993299  T
Q  292 aggagggaagtttctatttagcatatgggttgcatgaacat 332  Q
    ||| ||| ||| |||||| | |||| |||||| ||||||||    
T  30993300 agg-ggggagtctctattcaccataagggttgtatgaacat 30993339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 108
Target Start/End: Original strand, 9733455 - 9733505
Alignment:
Q  57 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaaca 108  Q
    |||||||||||||||| |||| |||||||||||||| |||||||| ||||||    
T  9733455 gattagtaacaaacctggagg-acatatagtaatctaaaaagattggtaaca 9733505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 18705354 - 18705408
Alignment:
Q  57 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 112  Q
    ||||||||||||| ||||||| |||||||||||||| |||| ||| ||||||||||    
T  18705354 gattagtaacaaagctagagg-acatatagtaatctaaaaatattggtaacaaact 18705408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 3290918 - 3290882
Alignment:
Q  73 agaggtacatatagtaatctgaaaagattagtaacaa 109  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  3290918 agaggtgcatatagtaatttgaaaagattagtaacaa 3290882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 345
Target Start/End: Original strand, 18534434 - 18534535
Alignment:
Q  242 agagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctatttagcatatgggttgcatgaacatgtggtagtg 341  Q
    |||||||||||  ||| ||| |||||||||| |||   ||||||||||||||  ||| ||| |||||| | |||| || ||| |||||||| ||||||||    
T  18534434 agagagagattcaaccataggaaatcatcaatttcgcaaaactagaggtaag--ggggagtctctattcaccataaggattgtatgaacatatggtagtg 18534531  T
Q  342 aagg 345  Q
    ||||    
T  18534532 aagg 18534535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 226 - 329
Target Start/End: Complemental strand, 1940 - 1839
Alignment:
Q  226 atagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctatttagcatatgggttgca 325  Q
    ||||||||| |||| || |||||||||||||||||| |||||||| |||||||||||||||||||| || ||| ||| |||||||| |||| |||||| |    
T  1940 atagcgagaagaacctacagagagatttcaccgtaggaaatcatc-aattctgcaaactagaggtatgg-ggggagtctctatttaccataagggttgta 1843  T
Q  326 tgaa 329  Q
    ||||    
T  1842 tgaa 1839  T

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Target: scaffold0281; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 2065 - 2012
Alignment:
Q  58 attagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 112  Q
    ||||||||||||| |||||| | |||||||||||| |||||||| ||||||||||    
T  2065 attagtaacaaacttagaggaa-atatagtaatctaaaaagattggtaacaaact 2012  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 192 - 323
Target Start/End: Original strand, 18147568 - 18147698
Alignment:
Q  192 aaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 291  Q
    |||||||| ||||||||| ||||| |||| ||||| | ||||| |||  |||||||||||||| |||||| || |||||||||||| | |||||||||||    
T  18147568 aaactagggttgtggagaaaagagtcaag-aggcacaccgagaagaatctagagagagatttcgccgtaggaattcatcaaattctccgaactagaggta 18147666  T
Q  292 aggagggaagtttctatttagcatatgggttg 323  Q
    | | ||| ||| |||||| | |||| ||||||    
T  18147667 atggggggagtctctattcatcataagggttg 18147698  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 22949289 - 22949172
Alignment:
Q  102 agtaacaaacttagatgaggattataaatagatgagaacattagaaaaatagggttacaccgatcagagaaaagattagagaataaaaggaaactaggat 201  Q
    |||| ||||||||| | | ||||| ||||||||||||||||||| |||||| ||||||| | |   ||||||||||||||||  |||   |||||||| |    
T  22949289 agtatcaaacttagctaatgattacaaatagatgagaacattaggaaaataaggttacaacaaatggagaaaagattagagatcaaagaaaaactagggt 22949190  T
Q  202 tgtggagagaagaggcaa 219  Q
    |||||||| |||||||||    
T  22949189 tgtggagaaaagaggcaa 22949172  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 3312900 - 3312845
Alignment:
Q  57 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 112  Q
    |||||||||||||| |||||||| | |||||||||| |||||||||||||||||||    
T  3312900 gattagtaacaaacatagaggtaaacatagtaatctaaaaagattagtaacaaact 3312845  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 299
Target Start/End: Original strand, 11508678 - 11508781
Alignment:
Q  196 taggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaagga 295  Q
    |||| ||||||||| |||||  ||||||||| | ||||| |||  ||||||||||||| || |||| || |||||||||||| | ||||||||||||||     
T  11508678 tagggttgtggagaaaagagttaaggaggcaaaccgagaagaatctagagagagattttacagtagtaattcatcaaattctccgaactagaggtaaggg 11508777  T
Q  296 ggga 299  Q
    ||||    
T  11508778 ggga 11508781  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 204 - 299
Target Start/End: Complemental strand, 32945463 - 32945370
Alignment:
Q  204 tggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggaggga 299  Q
    |||||||||||||||| |||| ||||| ||| |||| ||||||||  ||||| ||||| |||||||||| |||   ||||||||||||||| ||||    
T  32945463 tggagagaagaggcaaagaggaatagccagaagaacttagagaga--tttcaacgtaggaaatcatcaatttcgcaaaactagaggtaagggggga 32945370  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 34707355 - 34707314
Alignment:
Q  71 ctagaggtacatatagtaatctgaaaagattagtaacaaact 112  Q
    ||||||||||| ||||||| ||||||||||||||||||||||    
T  34707355 ctagaggtacaaatagtaacctgaaaagattagtaacaaact 34707314  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 11508515 - 11508554
Alignment:
Q  72 tagaggtacatatagtaatctgaaaagattagtaacaaac 111  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  11508515 tagaggtgcagatagtaatctgaaaagattagtaacaaac 11508554  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 112
Target Start/End: Original strand, 11508541 - 11508595
Alignment:
Q  57 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 112  Q
    |||||||||||||||| |||| |||||||||||||| |||| ||| ||||||||||    
T  11508541 gattagtaacaaacctggagg-acatatagtaatctaaaaaaattggtaacaaact 11508595  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 294
Target Start/End: Complemental strand, 33721354 - 33721260
Alignment:
Q  201 ttgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttc-accgtagaaaatcatcaaattctgc-aaactagaggtaagg 294  Q
    ||||||||| |||||  |||||| |||||||||| |||| |||||||||||||| || ||||||| |||||  ||||||| ||||||||| |||||    
T  33721354 ttgtggagaaaagagataaggagacatagcgagaagaacctagagagagatttcaacggtagaaattcatc-tattctgcaaaactagagataagg 33721260  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 33721531 - 33721489
Alignment:
Q  72 tagaggtacatatagtaatctgaaaagattagtaacaaactta 114  Q
    |||||||||| ||| |||||| |||||||||||||||||||||    
T  33721531 tagaggtacaaataataatctcaaaagattagtaacaaactta 33721489  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 195 - 294
Target Start/End: Original strand, 39435924 - 39436023
Alignment:
Q  195 ctaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaagg 294  Q
    |||||||| ||||||||||| ||||| ||||||||  ||| |||  || |||||||||||||||||| |||||||||| |||   |||||||||||||||    
T  39435924 ctaggattttggagagaagatgcaagaaggcatagtaagaagaatctaaagagagatttcaccgtaggaaatcatcaatttcacaaaactagaggtaagg 39436023  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 21143764 - 21143817
Alignment:
Q  58 attagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 112  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  21143764 attagtaacaaacctagagg-acatatagtaatctgaaaagattggtaacaaact 21143817  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 323
Target Start/End: Complemental strand, 39176519 - 39176441
Alignment:
Q  245 gagagatttcaccgtagaaaatcatcaaattctgcaaactagaggtaaggagggaagtttctatttagcatatgggttg 323  Q
    ||||||||||||| |||||||||||||| |||   ||||||||||||| | ||||||| |||||| | |||| ||||||    
T  39176519 gagagatttcaccatagaaaatcatcaatttcgcaaaactagaggtaatgggggaagtctctattcatcataagggttg 39176441  T

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Target: scaffold0323 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 186 - 345
Target Start/End: Complemental strand, 16383 - 16223
Alignment:
Q  186 aaaaggaaactaggattgtggagagaagaggcaaggaggcatagcgagaggaacgtagagagagatttcaccgt-agaaa--atcatcaaattctgcaaa 282  Q
    ||||| |||||||| || |||||||||||| ||||||||||||| |||| |||| ||||||||  ||  | ||| |||||  |||||||||||||  |||    
T  16383 aaaagaaaactagggttttggagagaagagacaaggaggcatagtgagaagaac-tagagaga-tttaaatcgtaagaaatcatcatcaaattctctaaa 16286  T
Q  283 ctagaggtaaggagggaagtttctatttagcatatgggttgcatgaacatgt-ggtagtgaagg 345  Q
    |||||||||||| ||||||| |||||| | || | |||||| |||| ||||| |||||||||||    
T  16285 ctagaggtaagg-gggaagtctctattcaccaaaagggttgtatgatcatgtgggtagtgaagg 16223  T

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Target: scaffold0978 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 3067 - 3013
Alignment:
Q  57 gattagtaacaaacctagaggtacatatagtaatctgaaaagattagtaacaaact 112  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| | ||||||||||    
T  3067 gattagtaacaaatctagaga-acatatagtaatctgaaaagagttgtaacaaact 3013  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 171251 - 171294
Alignment:
Q  73 agaggtacatatagtaatctgaaaagattagtaacaaacttaga 116  Q
    |||||| ||||||||||| |||||||||||||||||||| ||||    
T  171251 agaggtgcatatagtaatttgaaaagattagtaacaaacctaga 171294  T

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