View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12556_high_1 (Length: 434)
Name: NF12556_high_1
Description: NF12556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12556_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 28 - 431
Target Start/End: Complemental strand, 36939640 - 36939233
Alignment:
| Q |
28 |
ataaggagaggatacaaaggtgatagacttagagtgcttggccagagcttgaaataaaacacaacaattcatagattcacttctttctagttcannnnnn |
127 |
Q |
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||||||||||||||| |||||||| || | ||||||||||| |||||||||||||||||||||| |||||||| | |||||||||||||||||| |
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| T |
36939640 |
ataaggagaggatacgaaggtgattgaatgagagtgcttgggcagagcttgaaataaaacacaataattcatatactcacttctttctagttcatttttt |
36939541 |
T |
|
| Q |
128 |
n---cctccattacatttatcttctcaaatttgaaacacagatgcagaagacctaaaatcacaaaacccata-gcaacacaacaatatttactctccttc |
223 |
Q |
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|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||| |
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| T |
36939540 |
ttttcctccattacatttatgttctcaaatttgaaacacatatgcagaagacctaaaatcacaaaacccatgtgcaatacaacaacatttactctccttc |
36939441 |
T |
|
| Q |
224 |
tcttattttcgttatgatttcgttttgatgtgaatgaattgaatccgggtgcagaagaacaacccagatacagaagaactgaatccgaatttgacaattt |
323 |
Q |
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|||||||||| ||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||| || || ||||||||||| ||||| ||| |
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| T |
36939440 |
tcttattttcactataattccgttttgatgtgaatgaattgaatccaggtgcagaagaacaatccaaatacataa-aattgaatccgaatctgacagttt |
36939342 |
T |
|
| Q |
324 |
taatttgaatgatttcgttttgttt-ctctaagataaaggagttgttcttgataatcttgttcttccttccattcttgatgtaaatctgattcttccttc |
422 |
Q |
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| || |||||||||||||||| ||| |||||||||||||| |||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| |
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| T |
36939341 |
tgatgtgaatgatttcgtttttttttctctaagataaaggggttgttcttgataatcttattcttccttcgattcttgatgtgaatctgattcttccttc |
36939242 |
T |
|
| Q |
423 |
cctcattct |
431 |
Q |
| |
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|||| |||| |
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| T |
36939241 |
cctcgttct |
36939233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 158 - 283
Target Start/End: Complemental strand, 38789678 - 38789553
Alignment:
| Q |
158 |
aaacacagatgcagaagacctaaaatcacaaaacccatag-caacacaacaatatttactctccttctcttattttcgttatgatttcgttttgatgtga |
256 |
Q |
| |
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|||| ||||||||||||| ||||||||||||| ||||||| ||| ||||||| | |||||||| |||||| |||||| |||||||||| ||||||||||| |
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| T |
38789678 |
aaacccagatgcagaagaactaaaatcacaaa-cccataggcaatacaacaacacttactctctttctctcattttcattatgatttcattttgatgtga |
38789580 |
T |
|
| Q |
257 |
atgaattgaatccgggtgcagaagaac |
283 |
Q |
| |
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|||||||||||||| ||||||||||| |
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| T |
38789579 |
atgaattgaatccgaatgcagaagaac |
38789553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 356
Target Start/End: Complemental strand, 38789561 - 38789499
Alignment:
| Q |
294 |
cagaagaactgaatccgaatttgacaattttaatttgaatgatttcgttttgtttctctaaga |
356 |
Q |
| |
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||||||||||||||| |||||||||| |||| || |||||||||| ||||||||||||||||| |
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| T |
38789561 |
cagaagaactgaatcagaatttgacagttttgatgtgaatgatttggttttgtttctctaaga |
38789499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 7e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 155 - 356
Target Start/End: Complemental strand, 25583787 - 25583584
Alignment:
| Q |
155 |
ttgaaacacagatgcagaagacctaaaatcacaaaaccc-ata-gcaacacaacaatatttactctccttctcttattttcgttatgatttcgttttgat |
252 |
Q |
| |
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||||||| || |||||||||| |||||||| ||||| || ||| |||||||||||| | ||||||||||||||| |||||| ||||||||| |||||||| |
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| T |
25583787 |
ttgaaacccatatgcagaagaactaaaatcgcaaaaacctatatgcaacacaacaacacttactctccttctctcattttcattatgattttgttttgat |
25583688 |
T |
|
| Q |
253 |
gtgaatgaattgaatccgggtgcagaagaacaacccagatacagaagaactgaatccgaatttgacaattttaatttgaatgatttcgttttgtttctct |
352 |
Q |
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||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| | ||||| ||||||||||||||| |||||||| |
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| T |
25583687 |
gtgaatgaattgaatccggatgcagaagaacaaccctgatgtagaagaactgaatccgaatttgacagtattaatgtgaatgatttcgtttagtttctct |
25583588 |
T |
|
| Q |
353 |
aaga |
356 |
Q |
| |
|
|||| |
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|
| T |
25583587 |
aaga |
25583584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 283
Target Start/End: Complemental strand, 43930976 - 43930847
Alignment:
| Q |
155 |
ttgaaacacagatgcagaagacctaaaatcacaaaaccc-atagcaacacaacaatatttactctccttctcttattttcgttatgatttcgttttgatg |
253 |
Q |
| |
|
||||||| || |||||||||| |||||||| ||||| || ||| |||||||||| | ||| ||||||||| |||||| ||||||||||||||||||| |
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| T |
43930976 |
ttgaaacccatatgcagaagaactaaaatcgcaaaaacctatatgaacacaacaacacttattctccttcttgcattttcattatgatttcgttttgatg |
43930877 |
T |
|
| Q |
254 |
tgaatgaattgaatccgggtgcagaagaac |
283 |
Q |
| |
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|||||||||||||||||| ||||||||||| |
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| T |
43930876 |
tgaatgaattgaatccggatgcagaagaac |
43930847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 294 - 356
Target Start/End: Complemental strand, 43930855 - 43930793
Alignment:
| Q |
294 |
cagaagaactgaatccgaatttgacaattttaatttgaatgatttcgttttgtttctctaaga |
356 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||||| ||||||||||||||| |||||||||||| |
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|
| T |
43930855 |
cagaagaactgaattcgaatttgacagtattaatgtgaatgatttcgtttagtttctctaaga |
43930793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 25532458 - 25532500
Alignment:
| Q |
79 |
aaataaaacacaacaattcatagattcacttctttctagttca |
121 |
Q |
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|||||||||||||||||||| || |||||||||| |||||||| |
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| T |
25532458 |
aaataaaacacaacaattcacagcttcacttcttcctagttca |
25532500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 49140593 - 49140671
Alignment:
| Q |
85 |
aacacaacaattcatagattcacttctttctagttcannnnnnncctccattacatttatcttctcaaatttgaaacaca |
164 |
Q |
| |
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|||||||||||| ||||||||||||||| |||||||| ||||||||||||| |||||||||||||| ||||||| |
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| T |
49140593 |
aacacaacaatttatagattcacttcttcctagttca-tttcttcctccattacattaatcttctcaaatttaaaacaca |
49140671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 42596967 - 42597047
Alignment:
| Q |
83 |
aaaacacaacaattcatagattcacttctttctagttcannnnnnncctccattacatttatcttctcaaatttgaaacaca |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||| | |||||||||| |||||||||||||||||||||| |
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| T |
42596967 |
aaaacacaacaattcatagattcacttcttcctaattca-tttcttctaccattacattaatcttctcaaatttgaaacaca |
42597047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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