View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12556_high_3 (Length: 353)
Name: NF12556_high_3
Description: NF12556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12556_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 39082096 - 39082415
Alignment:
| Q |
18 |
atcattttcaagcatgacatggtgatcaaactaaagatggatcttctcatgaactctttcaaaacaattgatggtagaggtgtaaatgtacacattgctg |
117 |
Q |
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| T |
39082096 |
atcattttcaagcatgacatggtgatcaaactaaagatggatcttctcatgaattctttcaaaacaattgatggtagaggtgtaaatgtacacattgctg |
39082195 |
T |
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| Q |
118 |
aaggaccatgtattagaatacaagaaaagaccaacatcataattcatggtatacacattcatcattgtgtacgaggtggtagtggttatgtgagtgactc |
217 |
Q |
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| T |
39082196 |
aaggaccatgtattagaatacaagaaaagaccaacatcataattcatggtatacacattcatcattgtgtacgaggtggtagtggttatgtgagtgactc |
39082295 |
T |
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| Q |
218 |
tcctaaccatcgtgttaggaaagaaagatcggatggtgatgggattacaatatatggtgcggctcatatttgggtggatcattgttccttgtcaaattgt |
317 |
Q |
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| T |
39082296 |
tcctaaccatcgtgttaggaaagaaagatcggatggtgatgggattacaatatatggtgcggctcatatttgggtggatcattgttccttgtcaaattgt |
39082395 |
T |
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| Q |
318 |
tttgacggtttgattgatgt |
337 |
Q |
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| T |
39082396 |
tttgacggtttgattgatgt |
39082415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 224 - 337
Target Start/End: Original strand, 31726939 - 31727052
Alignment:
| Q |
224 |
ccatcgtgttaggaaagaaagatcggatggtgatgggattacaatatatggtgcggctcatatttgggtggatcattgttccttgtcaaattgttttgac |
323 |
Q |
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| T |
31726939 |
ccatcgtgttaggaaagaaagatcggatggtgatgggatcacaatctatggtgcggctcatatttgggtggatcattgttccttgtcaaattgttttgat |
31727038 |
T |
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| Q |
324 |
ggtttgattgatgt |
337 |
Q |
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| T |
31727039 |
ggtttcattgatgt |
31727052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 39075695 - 39075761
Alignment:
| Q |
66 |
atgaactctttcaaaacaattgatggtagaggtgtaaatgtacacattgctgaaggaccatgtatta |
132 |
Q |
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| T |
39075695 |
atgaattctttcaaaacaattgatggtagaggaacaaatgtgcacattgctggtggaccttgtatta |
39075761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 97
Target Start/End: Complemental strand, 34288724 - 34288693
Alignment:
| Q |
66 |
atgaactctttcaaaacaattgatggtagagg |
97 |
Q |
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| T |
34288724 |
atgaactctttcaaaacaattgatggtagagg |
34288693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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