View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12556_high_4 (Length: 314)
Name: NF12556_high_4
Description: NF12556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12556_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 8863980 - 8863715
Alignment:
| Q |
17 |
attctatatatatagtgtgtgcttatgcgataaagttttaaaaagataagttatttaaaaggttcttaagtatgaatagtattggtggcaatgtgaaaaa |
116 |
Q |
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| T |
8863980 |
attctatatatatagtgtgtgcttatgcgataaagttttaaaaagataagttatttaaatggttcttaagtatgaatagtattggtggcaatgtgaaaaa |
8863881 |
T |
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| Q |
117 |
caaccaacatggtgtgacacaagtgactgaatactgatatctggacccttaaccatttggtcgagagttgatctagtcaatgcgtaaagataagaatata |
216 |
Q |
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| T |
8863880 |
caaccaacatggtgtgacacaagtgactgaatactgatatctggacccttaaccatttggtcgaaagttgatttattcaatgcgtaaagataagaatata |
8863781 |
T |
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| Q |
217 |
cgttgagagatgttaactaattaaataaatctcgtacattttatggtatatattaatttttgtata |
282 |
Q |
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| T |
8863780 |
cgttgagagatgttaactaattaaataaatctcgtacattttgtggtatatattaatttttgtata |
8863715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 283 - 311
Target Start/End: Complemental strand, 8863673 - 8863645
Alignment:
| Q |
283 |
ttttgagagtttaaactttgaaccttctt |
311 |
Q |
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| T |
8863673 |
ttttgagagtttaaactttgaaccttctt |
8863645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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