View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12556_high_6 (Length: 279)
Name: NF12556_high_6
Description: NF12556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12556_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 42935623 - 42935890
Alignment:
| Q |
1 |
cttgtcccaactcttgttccaagctctctttcaacacattcaacgttgccaacgtagcttcgcggttcttaacaacaccaccaacattttcatgatcaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42935623 |
cttgtcccaactcttgttccaagctctctttcaacacattcaacgttgccaacgtagcttcacggttcttaacaacaccaccgacattttcatgatcaac |
42935722 |
T |
|
| Q |
101 |
---atcagtagtattggtctttggctccatcacagttcctgatgctgtaacaacatcatcctcttggatcactttttcttcttcgaaccgaacttgtttc |
197 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42935723 |
cacatcagaagtattggtctttggctccatcacagttcctgatgctgtaacaacagcatcctcttggatcactttttcttcttcgaaccgaacttgtttc |
42935822 |
T |
|
| Q |
198 |
acaacttcatcatctttgctttgatcctttgggaatacaggcacaagttccaatccatcttcagtgaa |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42935823 |
acaacttcatcatctttgctttgatcctttgggaatacaggcacaagttccaatccatcttcattgaa |
42935890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University