View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12556_low_10 (Length: 251)
Name: NF12556_low_10
Description: NF12556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12556_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 32558031 - 32557869
Alignment:
| Q |
1 |
cttcaacaaaagaaagacactggttaggaacattcgacactgctgaagaagcagctttagcttacgacagagccgcacgtggcatgcgtggctcacgtgc |
100 |
Q |
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| T |
32558031 |
cttcaacaaaagaaagacactggttaggaacattcgacactgctgaagaagcagctttagcttacgacagagccgcacgtggcatgcgtggctcacgtgc |
32557932 |
T |
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| Q |
101 |
tcgtaccaattttgtttaccatgatacccctcctggttcttctgttactccaatcctctcacc |
163 |
Q |
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| T |
32557931 |
tcgtaccaattttgtttaccatgatacccctcctggttcttctgttactccaatcctctcacc |
32557869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 32557842 - 32557793
Alignment:
| Q |
187 |
ctcaaagtttttacgacctttcttttgttcttcaacctgaaccggttcct |
236 |
Q |
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| T |
32557842 |
ctcaaagtttttacgacctttcttttgttcttcaacctgaacccgttcct |
32557793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 6507728 - 6507659
Alignment:
| Q |
4 |
caacaaaagaaagacactggttaggaacattcgacactgctgaagaagcagctttagcttacgacagagc |
73 |
Q |
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| T |
6507728 |
caactaaagaaagacattggttaggaacatttgatactgctcaagaagctgcttttgcttatgatagagc |
6507659 |
T |
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