View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12556_low_11 (Length: 202)
Name: NF12556_low_11
Description: NF12556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12556_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 8394994 - 8394822
Alignment:
| Q |
13 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgaga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8394994 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgaga |
8394895 |
T |
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| Q |
113 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcattt |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8394894 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcattt |
8394822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 8406335 - 8406507
Alignment:
| Q |
13 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgaga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8406335 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgaga |
8406434 |
T |
|
| Q |
113 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcattt |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8406435 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcattt |
8406507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 8412455 - 8412627
Alignment:
| Q |
13 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgaga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8412455 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgaga |
8412554 |
T |
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| Q |
113 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcattt |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8412555 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcattt |
8412627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 8434553 - 8434725
Alignment:
| Q |
13 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgaga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8434553 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgaga |
8434652 |
T |
|
| Q |
113 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcattt |
185 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8434653 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcattt |
8434725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 8395237 - 8395065
Alignment:
| Q |
13 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgaga |
112 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
8395237 |
agcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaactccagacatggttgtagcagtgaga |
8395138 |
T |
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| Q |
113 |
gtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcattt |
185 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8395137 |
gtaatcatttttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcattt |
8395065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 185
Target Start/End: Original strand, 8431496 - 8431652
Alignment:
| Q |
26 |
agagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatattta |
125 |
Q |
| |
|
|||||||| || ||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| |||| |
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| T |
8431496 |
agagcagaagatagtttcagagccaaaagtggtgcaacttccccacttgtgacagctgcaacaccagacatagtcttagcagtgagagtaatcatgttta |
8431595 |
T |
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| Q |
126 |
ttgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcattt |
185 |
Q |
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||||||| || |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8431596 |
ttgagttcaaaagaagattattccagttgttac---gttcgccaatgttgtgatgcattt |
8431652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 8375475 - 8375373
Alignment:
| Q |
83 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca |
182 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| |||||||| |||||||||||||| ||||||| |
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| T |
8375475 |
gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgttacgctgttcgccaatgttttgatgca |
8375376 |
T |
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| Q |
183 |
ttt |
185 |
Q |
| |
|
||| |
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| T |
8375375 |
ttt |
8375373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 8439628 - 8439730
Alignment:
| Q |
83 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca |
182 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| ||| |||| |||||||||||||| ||||||| |
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| T |
8439628 |
gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgctacgctgttcgccaatgttttgatgca |
8439727 |
T |
|
| Q |
183 |
ttt |
185 |
Q |
| |
|
||| |
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|
| T |
8439728 |
ttt |
8439730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 8417746 - 8417848
Alignment:
| Q |
83 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca |
182 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || || || || || |||||| | ||||| ||||||||| |||| | |||||||||||||| |
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| T |
8417746 |
gcaagaccagacatggttgtagcagtgagagtaatcatgttgatggaattcaagagaagagtgttccaattgttacgtagttcacaaatgttgtgatgca |
8417845 |
T |
|
| Q |
183 |
ttt |
185 |
Q |
| |
|
||| |
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|
| T |
8417846 |
ttt |
8417848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 8368812 - 8368890
Alignment:
| Q |
107 |
gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcattt |
185 |
Q |
| |
|
|||||||| ||||| || || |||||||||||||| ||||||| || | ||||||||||||||||| |||||||||| |
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| T |
8368812 |
gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcattt |
8368890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 8400598 - 8400520
Alignment:
| Q |
107 |
gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcattt |
185 |
Q |
| |
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|||||||| ||||| || || |||||||||||||| ||||||| || | ||||||||||||||||| |||||||||| |
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| T |
8400598 |
gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcattt |
8400520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 8422175 - 8422097
Alignment:
| Q |
107 |
gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcattt |
185 |
Q |
| |
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|||||||| ||||| || || |||||||||||||| ||||||| || | ||||||||||||||||| |||||||||| |
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| T |
8422175 |
gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcattt |
8422097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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