View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12556_low_4 (Length: 331)
Name: NF12556_low_4
Description: NF12556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12556_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 34216691 - 34216383
Alignment:
| Q |
18 |
tctctgttgcaagaacagacactctcttctacaccacttaatgatgtttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccac |
117 |
Q |
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| T |
34216691 |
tctctgttgcaagaacagacactctcttctacaccacttaatgatgtttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccac |
34216592 |
T |
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| Q |
118 |
agggaaggtttcctcactccgctagtcccgagttggaattggtttccgaggtagcacacgatgacgtgcattcacagggagtagagaaaatgccacagga |
217 |
Q |
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| T |
34216591 |
agggaaggtttcctcactccgctagtcccgagttggaattggtttccgaggtagcacacgatgacgtgcattcacagggagtagagaaaatgccacagga |
34216492 |
T |
|
| Q |
218 |
ttctcggaacgtaagagttcttgggacttctgtcgctgctgttcggctcccctcttcagttgagcacgtcaacgtgcatgagaactctgagtttactgtc |
317 |
Q |
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| T |
34216491 |
ttctcggaacgtaagagttcttgggacttctgtcgctgccgttcggctcccctcttcagttgagcacgtcaacgtgcatgagaactctgagtttactgtt |
34216392 |
T |
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| Q |
318 |
tctgcttct |
326 |
Q |
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||||||||| |
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| T |
34216391 |
tctgcttct |
34216383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 191
Target Start/End: Complemental strand, 34216297 - 34216203
Alignment:
| Q |
97 |
atgttacagatgaaattccacagggaaggtttcctcactccgctagtcccgagttggaattggtttccgaggtagcacacgatgacgtgcattca |
191 |
Q |
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| T |
34216297 |
atgttatagatgaaattccaaagggaaggttgcctcagctcactagccccgtgttggatttggttactgcagtagcatacgatgacgtgcattca |
34216203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 65 - 259
Target Start/End: Original strand, 19552189 - 19552380
Alignment:
| Q |
65 |
ttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccacagggaaggtttcctcactccgctagtcccgagttggaattggtttcc |
164 |
Q |
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|||||||||||| |||||||| | ||||| ||||||||||||||||| || || |||||||| ||||| | |||||||| ||| || ||| || |
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| T |
19552189 |
ttctgccaactcgttcagctttgcgttgcaaaatgttacagatgaaatccctcaaggaaggttacctcaggcttctagtcccatgttagagttg---tct |
19552285 |
T |
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| Q |
165 |
gaggtagcacacgatgacgtgcattcacagggagtagagaaaatgccacaggattctcggaacgtaagagttcttgggacttctgtcgctgctgt |
259 |
Q |
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| T |
19552286 |
gaagtagcgcacaatgacgtgcattcacatggagtggaacaaacacaacaggactctcggaccgtacaggttcttgagatttctgccgctgctgt |
19552380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 193
Target Start/End: Complemental strand, 27457937 - 27457810
Alignment:
| Q |
63 |
gtttctgccaactctttcagcttgacattgcagaatgttacagatgaaattccacagggaaggtttcctcactccgctagtcccgagttggaattggttt |
162 |
Q |
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||||| |||||||| |||||||| ||||||| ||||||| |||||||| || || |||||||| ||||| ||| |||||| | |||||| || | |
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| T |
27457937 |
gtttccgccaactcgttcagctttgcattgcataatgttatggatgaaatccctcaaggaaggttacctcaggccgttagtcctgtgttggagctg---t |
27457841 |
T |
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| Q |
163 |
ccgaggtagcacacgatgacgtgcattcaca |
193 |
Q |
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|||| ||||| |||||||||||||||||||| |
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| T |
27457840 |
ccgaagtagcgcacgatgacgtgcattcaca |
27457810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 21565079 - 21565119
Alignment:
| Q |
149 |
gttggaattggtttccgaggtagcacacgatgacgtgcatt |
189 |
Q |
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| T |
21565079 |
gttggaattggtttccgaggtagcccacgatgacgtgcatt |
21565119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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