View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12556_low_5 (Length: 325)
Name: NF12556_low_5
Description: NF12556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12556_low_5 |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 307
Target Start/End: Original strand, 11468528 - 11468821
Alignment:
| Q |
14 |
ttcactgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggcta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11468528 |
ttcactgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggcta |
11468627 |
T |
|
| Q |
114 |
attcaggaacagtcataggctttccatgtttgtggattgcatctactattcctagctccacagcagatttgagtgccatggaacttataaagctgtatac |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11468628 |
attcaggaacagtcataggctttccatgtttgtggattgcatctactattcctagttccacagcagatttgagtgccatggaacttataaagctgtatac |
11468727 |
T |
|
| Q |
214 |
atgtttgtataaatggatttgagcatgatacagctgagtttcttcactaccattgctcttgaaatccatttgttttatagattaagctttggtg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11468728 |
atgtttgtataaatggatttgagcatgatacagctgagtttcttcactgccattgctcttgaaatccatttgttttatagattaagctttggtg |
11468821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 307
Target Start/End: Complemental strand, 11522933 - 11522640
Alignment:
| Q |
14 |
ttcactgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggcta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11522933 |
ttcactgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggcta |
11522834 |
T |
|
| Q |
114 |
attcaggaacagtcataggctttccatgtttgtggattgcatctactattcctagctccacagcagatttgagtgccatggaacttataaagctgtatac |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11522833 |
attcaggaacagtcataggctttccatgtttgtggattgcatctactattcctagttccacagcagatttgagtgccatggaacttataaagctgtatac |
11522734 |
T |
|
| Q |
214 |
atgtttgtataaatggatttgagcatgatacagctgagtttcttcactaccattgctcttgaaatccatttgttttatagattaagctttggtg |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11522733 |
atgtttgtataaatggatttgagcatgatacagctgagtttcttcactgccattgctcttgaaatccatttgttttatagattaagctttggtg |
11522640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 19 - 284
Target Start/End: Original strand, 11445561 - 11445826
Alignment:
| Q |
19 |
tgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggctaattca |
118 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||| |||||||| | ||| |||||||||||||| ||||| || |||||||||||||| ||||||||| |
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|
| T |
11445561 |
tgttgtttttgcaaagaaaccattgtgtgttagcaggcgcaagagacgatacaggacactaactttcgaaggatggagtttcaaagatgaagctaattca |
11445660 |
T |
|
| Q |
119 |
ggaacagtcataggctttccatgtttgtggattgcatctactattcctagctccacagcagatttgagtgccatggaacttataaagctgtatacatgtt |
218 |
Q |
| |
|
| || |||||| || |||||||| |||||||||||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
11445661 |
gtaagagtcattggttttccatggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaatttataaagctgtatatatgtt |
11445760 |
T |
|
| Q |
219 |
tgtataaatggatttgagcatgatacagctgagtttcttcactaccattgctcttgaaatccattt |
284 |
Q |
| |
|
|||| | |||||||||||||||||| |||||| |||||||||| |||||||| || ||||||||| |
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|
| T |
11445761 |
tgtacagatggatttgagcatgatatagctgactttcttcactgccattgctactggaatccattt |
11445826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 11507298 - 11507033
Alignment:
| Q |
19 |
tgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggctaattca |
118 |
Q |
| |
|
||||||||| || |||||||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||| ||||||||| |
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|
| T |
11507298 |
tgttgttttcgcaaagaaaccattgtgtgttagcaagcgcaagagacgataaaggacactaactttagaagggtggagtttcaaagatgaagctaattca |
11507199 |
T |
|
| Q |
119 |
ggaacagtcataggctttccatgtttgtggattgcatctactattcctagctccacagcagatttgagtgccatggaacttataaagctgtatacatgtt |
218 |
Q |
| |
|
| || |||||| || |||||||| || |||||||||||| |||| ||||| ||||| || |||||||||||||||||| ||||||||| ||||| ||||| |
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| T |
11507198 |
gtaagagtcattggttttccatggttttggattgcatctgctatgcctagttccacggctgatttgagtgccatggaatttataaagccgtatatatgtt |
11507099 |
T |
|
| Q |
219 |
tgtataaatggatttgagcatgatacagctgagtttcttcactaccattgctcttgaaatccattt |
284 |
Q |
| |
|
|||| | |||||||||||| |||||||| ||| |||||||||| |||||||| |||||||||||| |
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|
| T |
11507098 |
tgtacagatggatttgagcgtgatacagttgattttcttcactgccattgctactgaaatccattt |
11507033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 11547529 - 11547264
Alignment:
| Q |
19 |
tgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggctaattca |
118 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||| |||||||| | ||| |||||||||||||| ||||| || |||||||||||||| ||||||||| |
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| T |
11547529 |
tgttgtttttgcaaagaaaccattgtgtgttagcaggcgcaagagacgatacaggacactaactttcgaaggatggagtttcaaagatgaagctaattca |
11547430 |
T |
|
| Q |
119 |
ggaacagtcataggctttccatgtttgtggattgcatctactattcctagctccacagcagatttgagtgccatggaacttataaagctgtatacatgtt |
218 |
Q |
| |
|
| || |||||| || |||||||| |||||||||||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
11547429 |
gtaagagtcattggttttccatggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaatttataaagctgtatatatgtt |
11547330 |
T |
|
| Q |
219 |
tgtataaatggatttgagcatgatacagctgagtttcttcactaccattgctcttgaaatccattt |
284 |
Q |
| |
|
|||| | |||||||||||||||||| | |||| |||||||||| |||||||| || ||||||||| |
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|
| T |
11547329 |
tgtacagatggatttgagcatgataaaactgactttcttcactgccattgctactggaatccattt |
11547264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 259
Target Start/End: Complemental strand, 34784115 - 34783870
Alignment:
| Q |
14 |
ttcactgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggcta |
113 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||| | ||| ||||| | ||| |||| |||||||||||||||| ||||| ||||||||||||| |
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|
| T |
34784115 |
ttcactgttgtttttgtaaagaagccattgtgtgttaaaaggcgtaagaatcgatagaggatgttaactttagaagggtggagttttaaagatgaggcta |
34784016 |
T |
|
| Q |
114 |
attcaggaacagtcataggctttccatgtttgtggattgcatctactattcctagctccacagcagatttgagtgccatggaacttataaagctgtatac |
213 |
Q |
| |
|
|||||| || |||||| || |||||||| || ||||||||||| |||| ||||| |||| || |||||||||||||||||||| | |||| ||||||| |
|
|
| T |
34784015 |
attcagaaagagtcattggttttccatggttatggattgcatcagctatgcctagttccatggctgatttgagtgccatggaactaacaaagttgtatac |
34783916 |
T |
|
| Q |
214 |
atgtttgtataaatggatttgagcatgatacagctgagtttcttca |
259 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| | | |||||||| |
|
|
| T |
34783915 |
atgtttgtacaaatggatttgagcatgatacagttcactttcttca |
34783870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 78 - 259
Target Start/End: Complemental strand, 34775830 - 34775649
Alignment:
| Q |
78 |
taactttagaagggtgaagtttcaaagatgaggctaattcaggaacagtcataggctttccatgtttgtggattgcatctactattcctagctccacagc |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| || |||||| || |||||||| ||||| |||||||| |||| ||||| |||| || |
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|
| T |
34775830 |
taactttagaagggtgaagtttcaaagatgaggctagttcagaaagagtcattggttttccatggttgtgaattgcatcagctatgcctagttccatggc |
34775731 |
T |
|
| Q |
178 |
agatttgagtgccatggaacttataaagctgtatacatgtttgtataaatggatttgagcatgatacagctgagtttcttca |
259 |
Q |
| |
|
|||||||| ||||||||||| | |||| |||||||||||||||| ||||||||||||||||||||||| | | |||||||| |
|
|
| T |
34775730 |
tgatttgagagccatggaactaacaaagttgtatacatgtttgtacaaatggatttgagcatgatacagttcactttcttca |
34775649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 284
Target Start/End: Complemental strand, 1955 - 1690
Alignment:
| Q |
19 |
tgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggctaattca |
118 |
Q |
| |
|
||||||||| || |||||||||| |||||||||||||||||||| | ||| ||||||||||||||||||||||| |||||||||||||| ||||||||| |
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|
| T |
1955 |
tgttgttttcgcaaagaaaccattgtgtgttagcaagcgcaagagacgataaaggacactaactttagaagggtggagtttcaaagatgaagctaattca |
1856 |
T |
|
| Q |
119 |
ggaacagtcataggctttccatgtttgtggattgcatctactattcctagctccacagcagatttgagtgccatggaacttataaagctgtatacatgtt |
218 |
Q |
| |
|
| || |||||| || |||||||| || |||||||||||| |||| ||||| ||||| || |||||||||||||||||| ||||||||| ||||| ||||| |
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|
| T |
1855 |
gtaagagtcattggttttccatggttttggattgcatctgctatgcctagttccacggctgatttgagtgccatggaatttataaagccgtatatatgtt |
1756 |
T |
|
| Q |
219 |
tgtataaatggatttgagcatgatacagctgagtttcttcactaccattgctcttgaaatccattt |
284 |
Q |
| |
|
|||| | |||||||||||| |||||||| ||| |||||||||| |||||||| |||||||||||| |
|
|
| T |
1755 |
tgtacagatggatttgagcgtgatacagttgattttcttcactgccattgctactgaaatccattt |
1690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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