View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12556_low_7 (Length: 307)
Name: NF12556_low_7
Description: NF12556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12556_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 111 - 297
Target Start/End: Original strand, 38874524 - 38874710
Alignment:
| Q |
111 |
atgaaatattgaatcaagagtgaatatttaatttggtcattaaaatgttatgaattagtgaatctgtctgtgtgaaagtgttaaaaggagatcatacaaa |
210 |
Q |
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| T |
38874524 |
atgaaatattgaatcaagagtgaatatttaatttggtcattaaaatgttatgaattagtgaatctgtctgtgtgaaagtgttaaaaggagatcatacaaa |
38874623 |
T |
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| Q |
211 |
aagcaaatcctccaagagcatggtttacaattgaaacaagagtaaatgataaatttgaccagtaaactattactctctcctcctatg |
297 |
Q |
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| T |
38874624 |
aagcaaatcctccaagagcatggtttacaattgaaacaagagtaaatgataaatttgaccattaaactattactctctcctcctatg |
38874710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 38874404 - 38874502
Alignment:
| Q |
17 |
gaagcatccatgatcgcaaggaatttcctaatcctttcttaatcatgggtatttggaactatcattctagcatttaaaggagatacataaatttatgaa |
115 |
Q |
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| T |
38874404 |
gaagcatccatgatctcaaggaatttcctaatcctttcttaatcatgggtatttggaactatcattctagcatttaaaggagatacataaatttatgaa |
38874502 |
T |
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