View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12556_low_9 (Length: 273)
Name: NF12556_low_9
Description: NF12556
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12556_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 25744774 - 25744555
Alignment:
| Q |
1 |
ctagtgaaggagtttctgaaaccaccagatgcacgaatatgctcttgtagcaaataacatgcaatgacaaggcacacaattactccaacaaggtcgtttc |
100 |
Q |
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| T |
25744774 |
ctagtgaaggagtttctgaaaccaccagatgcacgaatatgctcttgtagcaaataacatgcaatgacaaggcacacaattactccaacaaggtcgtttc |
25744675 |
T |
|
| Q |
101 |
taaaggtgcttgcaactagatcaggagatacaacaatcaaaagtatcaaagcacccggcaactccaaccaatctgcagaaacaatcatgaagggttgtta |
200 |
Q |
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| T |
25744674 |
taaaggtgcttgcaactagatcaggagatacaacaatcaaaagtatcaaagcacccggcaactccaaccaatctgcagaaacaatcatgaagggttgtta |
25744575 |
T |
|
| Q |
201 |
agtatataaaatatttcctc |
220 |
Q |
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||| |||| ||||||||||| |
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| T |
25744574 |
agtgtatagaatatttcctc |
25744555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 2 - 220
Target Start/End: Complemental strand, 25741239 - 25741021
Alignment:
| Q |
2 |
tagtgaaggagtttctgaaaccaccagatgcacgaatatgctcttgtagcaaataacatgcaatgacaaggcacacaattactccaacaaggtcgtttct |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||| |
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| T |
25741239 |
tagtgaaggagtttctgaaaccaccagatgcacgaatatgctcttgtagcaaataacatgcaatgacaaggcacacgattattccaactaggtcgtttct |
25741140 |
T |
|
| Q |
102 |
aaaggtgcttgcaactagatcaggagatacaacaatcaaaagtatcaaagcacccggcaactccaaccaatctgcagaaacaatcatgaagggttgttaa |
201 |
Q |
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| T |
25741139 |
aaaggtgcttgcaactagatcaggagatacaacaatcaagagtatcaaagcacccggcaactccaaccaatctgcagaaacaatcagaaagagtaattat |
25741040 |
T |
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| Q |
202 |
gtatataaaatatttcctc |
220 |
Q |
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|||||| ||||||||||| |
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| T |
25741039 |
gtatattcaatatttcctc |
25741021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 12514759 - 12514625
Alignment:
| Q |
19 |
aaaccaccagatgcacgaatatgctcttgtagcaaataacatgcaatgacaaggcacacaattactccaacaaggtcgtttctaaaggtgcttgcaacta |
118 |
Q |
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|||||||||||||| ||||| || |||||||||||||||||||||||||||||||| || | | ||||| ||| ||||||||||| |||||| || |
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| T |
12514759 |
aaaccaccagatgcccgaatttgttcttgtagcaaataacatgcaatgacaaggcatactaccaagccaacttcatcgcttctaaaggtgtttgcaaata |
12514660 |
T |
|
| Q |
119 |
gatcaggagatacaacaatcaaaagtatcaaagca |
153 |
Q |
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| T |
12514659 |
gatcgggagcaacaacaataagaagaatcaaagca |
12514625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 12510877 - 12510825
Alignment:
| Q |
22 |
ccaccagatgcacgaatatgctcttgtagcaaataacatgcaatgacaaggca |
74 |
Q |
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||||| ||||| |||||||| ||||| ||||||||||||||||||| |||||| |
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| T |
12510877 |
ccaccggatgcccgaatatgttcttgcagcaaataacatgcaatgataaggca |
12510825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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