View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12557_high_2 (Length: 442)
Name: NF12557_high_2
Description: NF12557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12557_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 2017077 - 2017499
Alignment:
| Q |
1 |
ctcgaacaaatgaccttgcggtattgaaatctgacaacaaccagtgccggagcaagattcattggccacgatatcattaaacctgttgcacaaagccaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2017077 |
ctcgaacaaatgaccttgcggtattgaaatctgacaacaaccagtgccggagcaagattcattggccacgatatcattaaacctgttgcacaaagccaaa |
2017176 |
T |
|
| Q |
101 |
catcccgtcgtgtagttgtttcccccaaaatcaaatgctgcgagtattgcaatcgtgtcacagccaacggcaaaaaacttgtttcgtgttgatgagacgg |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
2017177 |
catcccgtggtgtagttgtttcccccaaaatcaaatgctgcgagtattgcaatcgtgtcacagccaacggcaacaaacttgtttcgtgttgatgagacgg |
2017276 |
T |
|
| Q |
201 |
gaagatgtgtcattctgataccccaaaatgattggttcacctgtatgctcttttcgtcgtagcaatcgctggctactggccatgcaacacgcagttcacc |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2017277 |
gaaaatgtgtcattctgataccccaaaatgattggttcacctgtatgctcttttcgtcgtagcaatcgctggctactggccatgcaacacgcagttcacc |
2017376 |
T |
|
| Q |
301 |
atcaagcgagatgtttaggacagtttgattagtatgtggcaggaaaggtaaatgtgttgaggttnnnnnnnnnnnnnnnnntgcttaggtgcaatttatg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| ||||||||||||| |
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| T |
2017377 |
atcaagcgagatgtttaggacagtttgattagtatgtggcaggaaaggtatatgggttgaggttgaagaagaagaagaagatgctttggtgcaatttatg |
2017476 |
T |
|
| Q |
401 |
agaaaagtgttgtccaaggaaca |
423 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
2017477 |
agaaaagtgttgtccaaggaaca |
2017499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 331
Target Start/End: Complemental strand, 40566586 - 40566267
Alignment:
| Q |
12 |
gaccttgcggtattgaaatctgacaacaaccagtgccggagcaagattcattggccacgatatcattaaacctgttgcacaaagccaaacatcccgtcgt |
111 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||| || |||||||||| | |||||| ||||||| || ||||||||| ||||||| |||||| || || |
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|
| T |
40566586 |
gaccttggggtattgaaatctcgcaacaaccagtacctgagcaagattgactggccataatatcatcaagcctgttgcataaagccacacatcctgtggt |
40566487 |
T |
|
| Q |
112 |
gtagttgtttcccccaaaatcaaatgctgcgagtattgcaatcgtgtcacagccaacggcaaaaaacttgtttcgtgttgatgagacgggaagatgtgtc |
211 |
Q |
| |
|
|||||||||||||||| |||||| || | |||| | ||||||||||||||||||| || ||||||||||| |||| |||| | || ||||||| |
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|
| T |
40566486 |
gtagttgtttcccccagaatcaatcgccgagagtgctccaatcgtgtcacagccaactgctgtcaacttgtttcgagttggcgagatgtaaaaatgtgtc |
40566387 |
T |
|
| Q |
212 |
attctgataccccaaaatgattggttcacctgtatgctcttttcgtcgtagcaatcgctggctactggccatgcaacacgcagttcaccatcaagcgaga |
311 |
Q |
| |
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|| | ||| ||| | | ||||| | | ||| |||||| ||||||||||||||||||||||||||||||| ||| |||||||| || |||| |
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|
| T |
40566386 |
atgttcatatcccgcagcgtttggtatatgaatctgcccttttctgcgtagcaatcgctggctactggccatgcaacgtgcaattcaccattgagtgaga |
40566287 |
T |
|
| Q |
312 |
tgtttaggacagtttgatta |
331 |
Q |
| |
|
| ||||||||| |||||||| |
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|
| T |
40566286 |
tatttaggacattttgatta |
40566267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 40595958 - 40595769
Alignment:
| Q |
20 |
ggtattgaaatctgacaacaaccagtgccggagcaagattcattggccacgatatcattaaacctgttgcacaaagccaaacatcccgtcgtgtagttgt |
119 |
Q |
| |
|
||||||||||||| ||||||||| | |||||| ||||||||||||||||| |||||| ||| |||||||||||| |||| |||| | || ||||| ||| |
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|
| T |
40595958 |
ggtattgaaatctcacaacaacctgggccggaacaagattcattggccacaatatcactaagcctgttgcacaaggccacacatgcagtggtgtatgtgt |
40595859 |
T |
|
| Q |
120 |
ttcccccaaaatcaaatgctgcgagtattgcaatcgtgtcacagccaacggcaaaaaacttgtttcgtgttgatgagacgggaagatgtg |
209 |
Q |
| |
|
|||| | |||||| |||| |||||| | | || |||||||| ||||| || | ||||||||| | |||| |||||| ||| ||||| |
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|
| T |
40595858 |
ttcctttagaatcaattgcttcgagtagtcccattgtgtcacatccaactgctatcaacttgttttgagttggcgagacgtgaaaatgtg |
40595769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 260 - 364
Target Start/End: Complemental strand, 40571025 - 40570921
Alignment:
| Q |
260 |
tagcaatcgctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgattagtatgtggcaggaaaggtaaatgtgttg |
359 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||||||||| || || ||||||||||| ||| |||||||||| ||||||| ||| |||| | ||||| |
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|
| T |
40571025 |
tagcaatcacttgctactggccatgcagcacgcagttcaccgtcgagtgagatgtttagaacactttgattagtctgtggcaagaatggtacgtctgttg |
40570926 |
T |
|
| Q |
360 |
aggtt |
364 |
Q |
| |
|
||||| |
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|
| T |
40570925 |
aggtt |
40570921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 260 - 364
Target Start/End: Complemental strand, 40577448 - 40577344
Alignment:
| Q |
260 |
tagcaatcgctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgattagtatgtggcaggaaaggtaaatgtgttg |
359 |
Q |
| |
|
||||||| ||||||||||||||||||||| | |||||||||| ||| ||||||||||| ||| |||||||||| ||||||| ||| |||| | ||||| |
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|
| T |
40577448 |
tagcaatagctggctactggccatgcaacgtgaagttcaccattaagtgagatgtttagaacactttgattagtctgtggcaagaatggtacctctgttg |
40577349 |
T |
|
| Q |
360 |
aggtt |
364 |
Q |
| |
|
||||| |
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|
| T |
40577348 |
aggtt |
40577344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 40589562 - 40589388
Alignment:
| Q |
12 |
gaccttgcggtattgaaatctgacaacaaccagtgccggagcaagattcattggccacgatatcattaaacctgttgcacaaagccaaacatcccgtcgt |
111 |
Q |
| |
|
||||||| |||| |||||||| |||||||||| || || ||||| |||||||| |||| |||| |||||||||| ||||||||||||| | || |
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|
| T |
40589562 |
gaccttggggtaccgaaatctggcaacaaccaggaccagaacaagactcattggcaacgagatcagcgtgcctgttgcaccaagccaaacatccagaggt |
40589463 |
T |
|
| Q |
112 |
gtagttgtttcccccaaaatcaaatgctgcgagtattgcaatcgtgtcacagccaacggcaaaaaacttgtttcg |
186 |
Q |
| |
|
|||||||||||| || |||||| | || |||||||| || || ||||||||||| || | ||||||||||| |
|
|
| T |
40589462 |
gtagttgtttccttcagaatcaattactccgagtattccagatgtatcacagccaactgctaccaacttgtttcg |
40589388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 40595727 - 40595654
Alignment:
| Q |
260 |
tagcaatcgctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgattagt |
333 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||| ||| || || |||| |||| ||||||||| |
|
|
| T |
40595727 |
tagcaatgtctggctactggccatgcaacatgcagttcaccattaagtgatatatttaagacacgttgattagt |
40595654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 40600359 - 40600307
Alignment:
| Q |
269 |
ctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggac |
321 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| || ||||| |||||||| |
|
|
| T |
40600359 |
ctggctactggccatgcgacacgcaattcaccattgagtgagatatttaggac |
40600307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 155 - 364
Target Start/End: Complemental strand, 8490797 - 8490588
Alignment:
| Q |
155 |
gtgtcacagccaacggcaaaaaacttgtttcgtgttgatgagacgggaagatgtgtcattctgataccccaaaatgattggttcacctgtatgctctttt |
254 |
Q |
| |
|
|||||||| ||||| || | |||||||||| |||| ||||| ||||||||||||| |||| || | ||| |||||||||| || | | ||||| |
|
|
| T |
8490797 |
gtgtcacaaccaactgctatcaacttgtttccggttggtgagatttgaagatgtgtcatgttgatgccaggatatgtttggttcaccagtttaccctttt |
8490698 |
T |
|
| Q |
255 |
cgtcgtagcaatcgctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgattagtatgtggcaggaaaggtaaatg |
354 |
Q |
| |
|
| | |||||||| ||| ||| ||||||||||||| ||||||||||||| || ||||||||||| ||| |||||||| | ||||||| ||| |||| | |
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|
| T |
8490697 |
cagcatagcaatcactgcctattggccatgcaacatgcagttcaccatcgagtgagatgtttagaacactttgattactctgtggcaagaatggtacgtc |
8490598 |
T |
|
| Q |
355 |
tgttgaggtt |
364 |
Q |
| |
|
|||||||||| |
|
|
| T |
8490597 |
tgttgaggtt |
8490588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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