View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12557_high_3 (Length: 418)
Name: NF12557_high_3
Description: NF12557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12557_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 4 - 400
Target Start/End: Original strand, 7949259 - 7949664
Alignment:
| Q |
4 |
ttcaaatgcgggggttggaacttgtaagtgtcttggcatggttgtcactttattttgtaaaataannnnnnnnnnn--------ataattgacgagccta |
95 |
Q |
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| T |
7949259 |
ttcaaatgtgggggttggaacttgtaagtgtcttggcatggttgtcactttattttgtataataatttattttattttatttttataactgatgagcctt |
7949358 |
T |
|
| Q |
96 |
-aggcgacatctataatatataaatgaaaaagtgtaacacaaaagagaggg-ggcaaaaccaaaccatcaaaggaacattaacaaaatcgaaagttggga |
193 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7949359 |
gaggcgacatctataatatataaatgaaaaattgtaatacaaaagagagggtggcaaaaccaaaccctcaaaggaacattaacaaaatcgaaagttggga |
7949458 |
T |
|
| Q |
194 |
agacctagcttgttcctacctaggtcccctctaattacaattgaaggaaaggaccaccaagtgaaatcaacaatagataagcctaagtttgcaagtttgt |
293 |
Q |
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| T |
7949459 |
agacctagcttattcctacctaggtcccctctaattataattggaggaaaggaccac-aagtgaaatcagcaatagataagcctaagtttgcaagtttgt |
7949557 |
T |
|
| Q |
294 |
cagcacagtgatttccttctctgtaaatatgagacaggatgaattgcatagattgaagctttccaacacagttgttccatctattctttaatttccaagg |
393 |
Q |
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|||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7949558 |
cagcacgatgattttcttctctgtaaatatgagacaagatgaattgcatagattgaagctttccaacacagttgttccatctattctttaatttccaagg |
7949657 |
T |
|
| Q |
394 |
aactata |
400 |
Q |
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| T |
7949658 |
aactata |
7949664 |
T |
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