View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12557_high_4 (Length: 410)
Name: NF12557_high_4
Description: NF12557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12557_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 31 - 398
Target Start/End: Original strand, 8551120 - 8551493
Alignment:
| Q |
31 |
tatagtacaccttataatattgtacatctatactaaaaaacgtgtaataattataagaaaaattgcaaatatggagaaggttagaacnnnnnnnnn--ca |
128 |
Q |
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| T |
8551120 |
tatagtacaccttataatattgtacatctttactaaaaaacgtgtcataattataggaaaaattgcaattatgaagaagtttagaacaaaaaaaaaaaca |
8551219 |
T |
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| Q |
129 |
gattactatatacagcttctagcgttggaatagcagttcttttatttattcgataaacaaccaattacaatttttgcttaattaataacaatactaaaca |
228 |
Q |
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| T |
8551220 |
gattactatatacagcttctagtgttggaatagcagttcttttatttattcgataaacaaccaattacaatttttgcttaattaataacaatactaaaca |
8551319 |
T |
|
| Q |
229 |
aaaacaaatgtcagtattatttattattacaccacatatgttcacc----aattaataaatgcaaagataaaatccatttgaaattctaggcatagctgc |
324 |
Q |
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| T |
8551320 |
aaaacaaatgtcagtattatttattattacaccacatatgttcaccaattaattaataaatgcaaagataaaatccatttgaaattctaggcatagctgc |
8551419 |
T |
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| Q |
325 |
acattccataaacacaagaacctctactttcacacttgttaccacatttcccacaatgcttcttgttactccta |
398 |
Q |
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| T |
8551420 |
acattccataaacacaagaacctctactttcacacttgttaccacatttcccacaatgtttcttgttactccta |
8551493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 297 - 398
Target Start/End: Original strand, 8540896 - 8540997
Alignment:
| Q |
297 |
atccatttgaaattctaggcatagctgcacattccataaacacaagaacctctactttcacacttgttaccacatttcccacaatgcttcttgttactcc |
396 |
Q |
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| T |
8540896 |
atccatttgaaattctaggcatagctgcacatcccataaacacaagaacctttactgtcacacttgttaccacatttcccacaatgcttcttgttactcc |
8540995 |
T |
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| Q |
397 |
ta |
398 |
Q |
| |
|
|| |
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| T |
8540996 |
ta |
8540997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 306 - 398
Target Start/End: Original strand, 8532635 - 8532727
Alignment:
| Q |
306 |
aaattctaggcatagctgcacattccataaacacaagaacctctactttcacacttgttaccacatttcccacaatgcttcttgttactccta |
398 |
Q |
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| T |
8532635 |
aaattctatgcatagctgcacattccataaacacaagaacctctactttcacacttgttaccacatttcccacaatgtttcttgttactccta |
8532727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 296 - 398
Target Start/End: Original strand, 43246207 - 43246309
Alignment:
| Q |
296 |
aatccatttgaaattctaggcatagctgcacattccataaacacaagaacctctactttcacacttgttaccacatttcccacaatgcttcttgttactc |
395 |
Q |
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||||||| | |||||||| ||||| |||||||||||||||||||| ||||||||| | |||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
43246207 |
aatccatatcaaattctacgcatatctgcacattccataaacacatgaacctctattgtcacacttgttaccacattttccacaatgcttctcgttactc |
43246306 |
T |
|
| Q |
396 |
cta |
398 |
Q |
| |
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||| |
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| T |
43246307 |
cta |
43246309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 43246051 - 43246129
Alignment:
| Q |
181 |
ataaacaaccaattacaatttttgcttaattaataacaatactaaacaaaaacaaatgtcagtattatttattattacacca |
262 |
Q |
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| T |
43246051 |
ataaacaaccaattacattctttgcttaa---ataacaataccaagcaaaaacaaatatcgatattatttattattacacca |
43246129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 43245911 - 43245977
Alignment:
| Q |
36 |
tacaccttataatattgtacatctatactaaaaaacgtgtaataattataagaaaaattgcaaatatg |
103 |
Q |
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| T |
43245911 |
tacaccttataatattgtacatgtttactatgaaacatgtaatagttat-agaaaaactgcaaatatg |
43245977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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