View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12557_high_5 (Length: 392)

Name: NF12557_high_5
Description: NF12557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12557_high_5
NF12557_high_5
[»] chr3 (20 HSPs)
chr3 (23-178)||(26529745-26529900)
chr3 (178-357)||(37742723-37742899)
chr3 (179-354)||(44380252-44380427)
chr3 (181-348)||(33509684-33509851)
chr3 (256-351)||(50934501-50934596)
chr3 (206-352)||(47426350-47426496)
chr3 (289-359)||(32319473-32319543)
chr3 (286-354)||(10179868-10179936)
chr3 (256-352)||(47186175-47186271)
chr3 (183-354)||(35094544-35094717)
chr3 (256-352)||(31187145-31187241)
chr3 (286-354)||(10018671-10018739)
chr3 (256-352)||(42664673-42664769)
chr3 (179-354)||(17466271-17466446)
chr3 (256-352)||(34029366-34029462)
chr3 (200-350)||(39498689-39498838)
chr3 (286-354)||(10123211-10123279)
chr3 (179-233)||(19619217-19619271)
chr3 (299-351)||(21963073-21963125)
chr3 (297-337)||(25859037-25859077)
[»] chr2 (13 HSPs)
chr2 (180-354)||(34392080-34392254)
chr2 (179-354)||(7381690-7381864)
chr2 (178-338)||(23863800-23863958)
chr2 (179-354)||(37357915-37358094)
chr2 (256-354)||(21603957-21604055)
chr2 (178-329)||(4779608-4779759)
chr2 (179-357)||(4775629-4775808)
chr2 (178-242)||(21606149-21606213)
chr2 (179-331)||(25275620-25275771)
chr2 (198-347)||(14565870-14566019)
chr2 (179-321)||(41095784-41095926)
chr2 (293-352)||(37811091-37811150)
chr2 (178-214)||(919447-919483)
[»] chr5 (15 HSPs)
chr5 (180-354)||(19357261-19357434)
chr5 (179-354)||(11607532-11607707)
chr5 (179-347)||(33858536-33858704)
chr5 (178-352)||(1826259-1826433)
chr5 (218-354)||(39570080-39570216)
chr5 (256-354)||(9827786-9827884)
chr5 (179-336)||(33271630-33271787)
chr5 (256-352)||(38010689-38010785)
chr5 (256-352)||(13015381-13015477)
chr5 (256-352)||(29989962-29990058)
chr5 (285-352)||(13086753-13086820)
chr5 (256-352)||(13478120-13478216)
chr5 (203-297)||(42148201-42148295)
chr5 (256-351)||(13421085-13421180)
chr5 (179-215)||(9827903-9827939)
[»] chr4 (17 HSPs)
chr4 (179-352)||(12473704-12473877)
chr4 (179-352)||(12528113-12528286)
chr4 (185-354)||(35869575-35869744)
chr4 (179-354)||(22343335-22343510)
chr4 (204-351)||(33249397-33249544)
chr4 (181-351)||(52910050-52910219)
chr4 (179-354)||(51811912-51812087)
chr4 (196-354)||(21260792-21260950)
chr4 (179-354)||(55590480-55590644)
chr4 (256-352)||(52012778-52012874)
chr4 (266-360)||(34829168-34829262)
chr4 (256-352)||(9799438-9799534)
chr4 (293-348)||(49998486-49998541)
chr4 (179-248)||(1796654-1796723)
chr4 (256-351)||(49999663-49999758)
chr4 (178-240)||(35781021-35781083)
chr4 (311-354)||(33174516-33174560)
[»] chr1 (12 HSPs)
chr1 (179-352)||(2569037-2569209)
chr1 (181-352)||(29119324-29119495)
chr1 (183-354)||(32676134-32676305)
chr1 (178-352)||(46435462-46435624)
chr1 (203-354)||(8462127-8462277)
chr1 (256-352)||(8809715-8809811)
chr1 (259-354)||(25161307-25161402)
chr1 (280-354)||(7214510-7214584)
chr1 (179-238)||(15387156-15387215)
chr1 (303-351)||(16679821-16679868)
chr1 (293-352)||(35998252-35998311)
chr1 (180-215)||(36771533-36771568)
[»] chr6 (8 HSPs)
chr6 (178-351)||(1211841-1212014)
chr6 (179-352)||(5403874-5404047)
chr6 (179-354)||(32644836-32645009)
chr6 (287-357)||(11753162-11753232)
chr6 (256-352)||(34245567-34245663)
chr6 (178-223)||(10503256-10503301)
chr6 (259-351)||(11113557-11113649)
chr6 (197-248)||(26526385-26526436)
[»] chr7 (9 HSPs)
chr7 (179-354)||(35341534-35341709)
chr7 (179-352)||(48250154-48250329)
chr7 (179-354)||(48072387-48072560)
chr7 (179-328)||(32694568-32694717)
chr7 (259-348)||(31306951-31307041)
chr7 (197-248)||(40856949-40857000)
chr7 (293-351)||(36776062-36776120)
chr7 (256-352)||(40893116-40893213)
chr7 (288-352)||(40856392-40856456)
[»] chr8 (8 HSPs)
chr8 (178-352)||(24337827-24338001)
chr8 (179-354)||(11254026-11254200)
chr8 (185-360)||(41179567-41179742)
chr8 (179-345)||(18168392-18168559)
chr8 (179-345)||(18631949-18632116)
chr8 (202-344)||(4708328-4708470)
chr8 (256-352)||(1514803-1514899)
chr8 (300-351)||(32825954-32826005)
[»] scaffold0229 (1 HSPs)
scaffold0229 (179-351)||(13003-13176)
[»] scaffold0032 (1 HSPs)
scaffold0032 (179-354)||(34192-34365)
[»] scaffold0519 (1 HSPs)
scaffold0519 (179-354)||(11193-11367)
[»] scaffold0263 (2 HSPs)
scaffold0263 (303-351)||(23094-23142)
scaffold0263 (256-351)||(23174-23263)
[»] scaffold0041 (1 HSPs)
scaffold0041 (256-352)||(73071-73168)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 26529745 - 26529900
Alignment:
Q  23 gattttgccttaatgtagaaatgacaccacatagccaaacaaacacttacaagatctcaacgatcatagtcaataaatatgtaaggacccaattttttgt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||     
T  26529745 gattttgccttaatgtagaaatgacaccacatagccaaacaaacacttaaaagatctcaacgatcatagtcaataaatatgcaaggacccaattttttgg 26529844  T
Q  123 tatggatatttttccttcaattagcaaaaccctttactttactcatgcaagaatgg 178  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||    
T  26529845 tatggatatttttccttcaattagcaaaaccatttacttcactcattcaagaatgg 26529900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 178 - 357
Target Start/End: Complemental strand, 37742899 - 37742723
Alignment:
Q  178 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 277  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||| ||||       ||||||||||||||||||||||    
T  37742899 gggatagcacttgtgtaacataatggtatataccattgcccaattataatgtgccacgtggcacactctttaaaaaaatatatcaaataaagcattggta 37742800  T
Q  278 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccc 357  Q
    |||||| |||||||||||||| |||||||||| |||||| |||||||||||||||||||||   ||||||||||||||||    
T  37742799 atgtaacattggtaggtggcatactctaattgaccaatgatatataccattggtaccttaa---tacacaagtggaaccc 37742723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 179 - 354
Target Start/End: Complemental strand, 44380427 - 44380252
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||       ||||||||||||||||||  |||    
T  44380427 ggataacacttgtgtaccataatggtatataccattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaagcatttataa 44380328  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
     ||||||||| |||||| |||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  44380327 agtaatattgataggtgacacactataattggtcaatagtatataccattggtaccttaatggtacacaagtggaa 44380252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 181 - 348
Target Start/End: Complemental strand, 33509851 - 33509684
Alignment:
Q  181 atagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatg 280  Q
    ||||||||||||||  ||||||||||||| ||||||  ||||| |||||| || |||||||| |||||       || ||||||||||||||   ||| |    
T  33509851 atagcacttgtgtacaataatggtatatatcattgtctaattagaatgtgccatgtggcacatcctttaaaaaaatacatcaaataaagcatctataaag 33509752  T
Q  281 taatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaa 348  Q
    |||||||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||||||||||||    
T  33509751 taatattggtaggtggcacactctaattggtcaatgatatatactattagtaccttaatggtacacaa 33509684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 256 - 351
Target Start/End: Complemental strand, 50934596 - 50934501
Alignment:
Q  256 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 351  Q
    |||||||||||| |||||  ||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50934596 tatatcaaataatgcatttataaagtaacattggtaagtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 50934501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 206 - 352
Target Start/End: Complemental strand, 47426496 - 47426350
Alignment:
Q  206 tataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacactcta 305  Q
    ||||||||||  |||||| |||||  || ||||||||||||||       |||||||||||||||||   ||| |||| |||| |||||| |||||||||    
T  47426496 tataccattgcccaattagaatgtaccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaagtaacattgataggtgacacactcta 47426397  T
Q  306 attggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  47426396 attggccaatggtatatactattggtaccttaatggtacacaagtgg 47426350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 289 - 359
Target Start/End: Original strand, 32319473 - 32319543
Alignment:
Q  289 gtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaacccca 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  32319473 gtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtagaatccca 32319543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 286 - 354
Target Start/End: Original strand, 10179868 - 10179936
Alignment:
Q  286 ttggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  10179868 ttggtaggtggcacactctaattgaccaatggtatataccattggtactttaatggtacacaagtggaa 10179936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 352
Target Start/End: Complemental strand, 47186271 - 47186175
Alignment:
Q  256 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    |||||||||||||| |||  ||| |||| ||||||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  47186271 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacacaagtgg 47186175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 183 - 354
Target Start/End: Complemental strand, 35094717 - 35094544
Alignment:
Q  183 agcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgta 282  Q
    |||| ||||||| ||||||||||| || |||||| |||||| ||||||||||||| |||| |||||       |||||||||||||  |||  ||| |||    
T  35094717 agcatttgtgtaccataatggtatgtatcattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaaatatttataaagta 35094618  T
Q  283 atattggtaggtggcacactc--taattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
    | |||||||||||||| ||||  ||||| | ||||||||||||||| |||||| ||||||||||  ||||||||    
T  35094617 acattggtaggtggcatactctataattagtcaatggtatataccactggtactttaatggtactgaagtggaa 35094544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 352
Target Start/End: Original strand, 31187145 - 31187241
Alignment:
Q  256 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||| ||||||    
T  31187145 tatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacataagtgg 31187241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 286 - 354
Target Start/End: Original strand, 10018671 - 10018739
Alignment:
Q  286 ttggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
    ||||||||||||||||| | |||| ||||||||||||| ||||||||| ||||||||||||||||||||    
T  10018671 ttggtaggtggcacacttttattgaccaatggtatataacattggtactttaatggtacacaagtggaa 10018739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 256 - 352
Target Start/End: Complemental strand, 42664769 - 42664673
Alignment:
Q  256 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    ||||||||||||| ||||  |||  ||| ||||||| |||||||||||| ||||| ||||| |||||| | ||||||||||||||||||||||||||    
T  42664769 tatatcaaataaaacatttataaaataacattggtatgtggcacactcttattggtcaatgttatataactttggtaccttaatggtacacaagtgg 42664673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 179 - 354
Target Start/End: Complemental strand, 17466446 - 17466271
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    ||||| || ||||||| | |||||||||||||||||| ||| ||| | ||||  |||||||| |||||||       |||||||| |||| ||||  |||    
T  17466446 ggataacatttgtgtaccgtaatggtatataccattgctcagttagattgtggtacgtggcataccctttaaaaaaatatatcaactaaatcatttataa 17466347  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
     |||| |||| |||||| ||||||||||||| |||||| |||||||||||| ||  | ||| |||||||| |||||    
T  17466346 agtaacattgataggtgacacactctaattgaccaatgatatataccattgatatttgaatcgtacacaaatggaa 17466271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 352
Target Start/End: Original strand, 34029366 - 34029462
Alignment:
Q  256 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    ||||||||||||| ||||  ||| |||| ||| ||| |||||||||||| ||||  ||||| |||||| ||||||||||||||||||| ||||||||    
T  34029366 tatatcaaataaaacatttataaagtaacattagtatgtggcacactcttattgatcaatgttatataacattggtaccttaatggtaaacaagtgg 34029462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 350
Target Start/End: Original strand, 39498689 - 39498838
Alignment:
Q  200 atggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcac 299  Q
    ||||||||||| |||| ||||||| |||||||||||||||||| |||||       ||||| |||||||  |||  |||  ||| || | |||||| |||    
T  39498689 atggtatatactattgctcaattagaatgtgtcacgtggcacatccttt-aaaaattatattaaataaaatatttataaaataacatcgataggtgacac 39498787  T
Q  300 actctaattggccaatggtatataccattggtaccttaatggtacacaagt 350  Q
    ||| |||||| |||||  |||||| ||||||||| ||||||||||||||||    
T  39498788 actttaattgaccaataatatatatcattggtactttaatggtacacaagt 39498838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 354
Target Start/End: Original strand, 10123211 - 10123279
Alignment:
Q  286 ttggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
    ||||||||||||||||| | |||| ||| || |||||| ||||| ||| ||||||||||||||||||||    
T  10123211 ttggtaggtggcacacttttattgaccattgatatataacattgatactttaatggtacacaagtggaa 10123279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 19619271 - 19619217
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtca 233  Q
    ||||||||| |||||| ||||||||||||||||||||  |||||| |||||||||    
T  19619271 ggatagcacatgtgtaccataatggtatataccattgcccaattaaaatgtgtca 19619217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 21963073 - 21963125
Alignment:
Q  299 cactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 351  Q
    |||||| ||||| ||||| |||||| ||||| ||||||||||||||| |||||    
T  21963073 cactcttattggtcaatgttatataacattgataccttaatggtacataagtg 21963125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 25859037 - 25859077
Alignment:
Q  297 cacactctaattggccaatggtatataccattggtacctta 337  Q
    |||||||||||||||||||| |||||| |||||||| ||||    
T  25859037 cacactctaattggccaatgttatataacattggtagctta 25859077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 180 - 354
Target Start/End: Original strand, 34392080 - 34392254
Alignment:
Q  180 gatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaat 279  Q
    ||||||||||||||| ||||||||||||||||||||| |||||| | |||| || ||||||||||||||       ||||||||||||||||||  |||     
T  34392080 gatagcacttgtgtaccataatggtatataccattgtccaattagattgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatttataaa 34392179  T
Q  280 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34392180 gtaagattggtaggtggcacactctaattggccaatggtatataccattggtacctcaatggtacacaagtggaa 34392254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 179 - 354
Target Start/End: Complemental strand, 7381864 - 7381690
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    |||||| ||||| |||  |||||||||||||| ||||  |||||| |||||||||| || |||| |||||       |||||||||||||| |||  |||    
T  7381864 ggatagaacttgcgtactataatggtatatactattgcccaattaaaatgtgtcacatgacacatcctttaaaaaa-tatatcaaataaagaatttataa 7381766  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
     |||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  7381765 agtaacattggtagatggcacactctaattggccaatagtatataccattggtaccttaatggtacacaagcggaa 7381690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 178 - 338
Target Start/End: Original strand, 23863800 - 23863958
Alignment:
Q  178 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 277  Q
    ||||||||||| ||||| ||||||| |||||| |||||| |||||| |||||| || ||||||||||||||       ||||||||||||||||||  ||    
T  23863800 gggatagcactagtgtaccataatgatatatatcattgtccaattagaatgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttata 23863899  T
Q  278 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaa 338  Q
    | |||| ||||||||||||||||||||||||| |||||   ||||||||||||||||||||    
T  23863900 aagtaacattggtaggtggcacactctaattgaccaat--aatataccattggtaccttaa 23863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 179 - 354
Target Start/End: Original strand, 37357915 - 37358094
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnnta----tatcaaataaagcattg 274  Q
    |||||||||||||||| |||||| |||||||||||||| |||||| ||||||||||||||||||   |||        |    ||| ||||||||||||     
T  37357915 ggatagcacttgtgtatcataatagtatataccattgtccaattagaatgtgtcacgtggcacatagtttaaaaaaaaaaaaatattaaataaagcattt 37358014  T
Q  275 gtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
     ||| |||| |||| |||||| |||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||    
T  37358015 ataaagtaacattgataggtgacacactctaattagtcaatggtatatatcattggtaccttaatgatacacaagtggaa 37358094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 256 - 354
Target Start/End: Complemental strand, 21604055 - 21603957
Alignment:
Q  256 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
    ||||||||||||| ||||  ||| |||| |||||||||||  ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21604055 tatatcaaataaaacatttataaagtaacattggtaggtgatacactataattggtcaatggtatataccattggtaccttaatggtacacaagtggaa 21603957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 178 - 329
Target Start/End: Complemental strand, 4779759 - 4779608
Alignment:
Q  178 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 277  Q
    |||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||| |||| |||||       |||||||||||||| |||  ||    
T  4779759 gggataacacttgtgtatcataatggtatataccattgtccaattagaatgtgtcacgtgacacatcctttaaaaaaatatatcaaataaagtatttata 4779660  T
Q  278 atgtaatattggtaggtggcacactctaattggccaatggtatataccattg 329  Q
    | |||| |||| |||| |||||||| ||| ||  ||||||||||||| ||||    
T  4779659 aagtaacattgttaggcggcacactataagtgatcaatggtatatactattg 4779608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 179 - 357
Target Start/End: Complemental strand, 4775808 - 4775629
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagca-ttggta 277  Q
    ||||| || ||||||| ||||||||||||||||||||| |||||| | |||| || |||||||| |||||       ||||| ||||||| || ||  ||    
T  4775808 ggataacatttgtgtaccataatggtatataccattgtccaattaaattgtgccatgtggcacatcctttaaaaaaatatattaaataaaacaattaata 4775709  T
Q  278 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccc 357  Q
    | |||| |||||||| ||  ||| ||||||||||||||  |||||| |||||||| |||||||||||| |||||| ||||    
T  4775708 aagtaagattggtagatgagacattctaattggccaataatatatatcattggtagcttaatggtacataagtggtaccc 4775629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 21606213 - 21606149
Alignment:
Q  178 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcaca 242  Q
    |||||||||||| |||| ||||||||||||||||||||| |||||| ||||||||||||||||||    
T  21606213 gggatagcacttctgtatcataatggtatataccattgtccaattagaatgtgtcacgtggcaca 21606149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 179 - 331
Target Start/End: Original strand, 25275620 - 25275771
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    ||||||||||| |||| |||||||||||||| |||||| |||||| ||||| |||||||||||| |||||       |||||||||||||| |||   ||    
T  25275620 ggatagcacttctgtatcataatggtatatatcattgtccaattagaatgtatcacgtggcacatcctttaaaaaagtatatcaaataaagtatt-taaa 25275718  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggt 331  Q
     |||| |||| ||||||||||||  ||||||  |||| ||||| || ||||||    
T  25275719 agtaacattgataggtggcacacaataattgatcaatcgtataaactattggt 25275771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 198 - 347
Target Start/End: Original strand, 14565870 - 14566019
Alignment:
Q  198 taatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggc 297  Q
    ||||| ||||||| |||| ||| ||| ||||||| || ||||||| |||||       |||||||||| ||| | |  |||  ||||||||||| || ||    
T  14565870 taatgttatatacaattggtcagttaaaatgtgttacatggcacatcctttaaaaaactatatcaaatgaagtacttataaaataatattggtatgtagc 14565969  T
Q  298 acactctaattggccaatggtatataccattggtaccttaatggtacaca 347  Q
    |||||||| |||  ||||| |||||| ||||||||||||| |||||||||    
T  14565970 acactctacttgatcaatgatatataacattggtaccttagtggtacaca 14566019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 321
Target Start/End: Original strand, 41095784 - 41095926
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    |||||||||||  ||| ||||||||||||||||||||  || |||   |||| || |||||| ||| |||       | ||||||||||||||||  |||    
T  41095784 ggatagcacttaggtaccataatggtatataccattggccatttagggtgtgccatgtggcataccttttaaaaaaatctatcaaataaagcatttataa 41095883  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtata 321  Q
     |||| ||||||||||||  ||||||||||| ||||| |||||    
T  41095884 agtaacattggtaggtggtgcactctaattgaccaattgtata 41095926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 37811150 - 37811091
Alignment:
Q  293 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    |||||||||| | ||||||||||| |||||| |||||||| |  ||||||||||||||||    
T  37811150 gtggcacactttcattggccaatgttatataacattggtatcccaatggtacacaagtgg 37811091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 919447 - 919483
Alignment:
Q  178 gggatagcacttgtgtaacataatggtatataccatt 214  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  919447 gggatagcacttgtgtaccataatggtttataccatt 919483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 180 - 354
Target Start/End: Original strand, 19357261 - 19357434
Alignment:
Q  180 gatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaat 279  Q
    ||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||||| ||| |||||       ||||||||||||||||||  |||     
T  19357261 gatagcacttgtgtaccataatggtatatatcattgtccaattagaatgtgtcacgtgggacatcctttaaaaaa-tatatcaaataaagcatttataaa 19357359  T
Q  280 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19357360 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccctaatggtacacaagtggaa 19357434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 179 - 354
Target Start/End: Original strand, 11607532 - 11607707
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    |||||||||||||||| ||||||| ||||||||||||| |||||| |||||| | |||||||||||||||       ||||||||||||| ||||  |||    
T  11607532 ggatagcacttgtgtaccataatgatatataccattgtccaattagaatgtggcccgtggcacaccctttaaaaaagtatatcaaataaaacatttataa 11607631  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
     ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  11607632 agtaatattggtaggtggcacactataattggtcaatggtatataccattggtaccttaatggtatacaagtggaa 11607707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 179 - 347
Target Start/End: Original strand, 33858536 - 33858704
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    |||||||||||||||| ||||||||||||||||||||  |||||| ||||||||||||||||||||||||       ||||||||||||| ||||  |||    
T  33858536 ggatagcacttgtgtaccataatggtatataccattgcccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataa 33858635  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacaca 347  Q
     |||| |||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||||||||    
T  33858636 agtaacattggtaggtggcacactataattggtcaatgatatatactattggtaccttaatggtacaca 33858704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 178 - 352
Target Start/End: Complemental strand, 1826433 - 1826259
Alignment:
Q  178 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 277  Q
    |||||| |||||||||| ||||||| |||||| ||||||||||||| |||||| || ||||||||  ||||       |||||||||||||||||    |    
T  1826433 gggatatcacttgtgtatcataatgatatatatcattgttcaattaaaatgtgccatgtggcacatactttaaaaaaatatatcaaataaagcatctaca 1826334  T
Q  278 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    | |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  1826333 aagtaatattggtaggtgacacactctaattgaccaatggtatataccattggtactttaatggtacacaagtgg 1826259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 218 - 354
Target Start/End: Original strand, 39570080 - 39570216
Alignment:
Q  218 caattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatgg 317  Q
    |||||| ||| ||||| ||||||||||||||       ||||||||||||| ||||  ||| |||| ||||||||||| |||||||||||||||||||||    
T  39570080 caattagaatatgtcaggtggcacaccctttaaaaaagtatatcaaataaaacatttataaagtaacattggtaggtgacacactctaattggccaatgg 39570179  T
Q  318 tatataccattggtaccttaatggtacacaagtggaa 354  Q
    |||||||||||| ||| |||||| |||||||||||||    
T  39570180 tatataccattgatactttaatgatacacaagtggaa 39570216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 256 - 354
Target Start/End: Complemental strand, 9827884 - 9827786
Alignment:
Q  256 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
    |||||||||||||  |||  ||| ||||||||||||||||| |||||||||||| | || |||||||||||||||||||||||||||||||||||||||    
T  9827884 tatatcaaataaaatatttataaagtaatattggtaggtggtacactctaattgactaaaggtatataccattggtaccttaatggtacacaagtggaa 9827786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 179 - 336
Target Start/End: Complemental strand, 33271787 - 33271630
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    ||||||||||| |||| ||||||||||||||| ||||  |||||| |||||| |||||||| || |||||       ||||||||||||||||||  | |    
T  33271787 ggatagcacttatgtaccataatggtatatactattgcccaattagaatgtgccacgtggcgcatcctttaaaaaaatatatcaaataaagcatttatca 33271688  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtacctt 336  Q
     |||| |||| ||| || |||||||||||||||||||| |||||| ||||||||||||    
T  33271687 agtaacattgatagatgacacactctaattggccaatgatatatatcattggtacctt 33271630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 256 - 352
Target Start/End: Original strand, 38010689 - 38010785
Alignment:
Q  256 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    |||||||||||||| |||  ||| |||| ||||||| |||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  38010689 tatatcaaataaagtatttataaagtaacattggtatgtggcacactcttattggccaatgttatataacattggtaccttaatggtacacaagtgg 38010785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 352
Target Start/End: Complemental strand, 13015477 - 13015381
Alignment:
Q  256 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    |||||||||||||  |||  ||| |||| ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  13015477 tatatcaaataaaatatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 13015381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 352
Target Start/End: Complemental strand, 29990058 - 29989962
Alignment:
Q  256 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||||||||||| ||||| ||||| |||||| ||||| ||||||||||||||||||||||    
T  29990058 tatatcaaataaaacatttataaagtaacattggtatgtggcacactcttattggtcaatgttatataacattgataccttaatggtacacaagtgg 29989962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 285 - 352
Target Start/End: Complemental strand, 13086820 - 13086753
Alignment:
Q  285 attggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  13086820 attggtatgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 13086753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 352
Target Start/End: Original strand, 13478120 - 13478216
Alignment:
Q  256 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    |||||||||||||  |||  ||| |||| | ||||| |||||||||||| ||||| ||||| |||||| ||||||| ||||||||||||||||||||    
T  13478120 tatatcaaataaaatatttataaagtaacaatggtatgtggcacactcttattggtcaatgttatataacattggttccttaatggtacacaagtgg 13478216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 297
Target Start/End: Complemental strand, 42148295 - 42148201
Alignment:
Q  203 gtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggc 297  Q
    ||||||||||||||||||||| ||||||  |||||| |||||||||       ||||||||||||| ||||  ||| |||| |||||||||||||    
T  42148295 gtatataccattgttcaattagaatgtgcaacgtggtacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggtggc 42148201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 351
Target Start/End: Original strand, 13421085 - 13421180
Alignment:
Q  256 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 351  Q
    ||||| ||||||||||||  ||| |||| |||| ||  ||  ||||||| ||||  ||||| |||||| ||||| |||||||||||||||||||||    
T  13421085 tatattaaataaagcatttataaagtaacattgatatttgatacactcttattgatcaatgttatataacattgataccttaatggtacacaagtg 13421180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 9827939 - 9827903
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattg 215  Q
    ||||| |||||||||| ||||||||||||||||||||    
T  9827939 ggataacacttgtgtaccataatggtatataccattg 9827903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 179 - 352
Target Start/End: Complemental strand, 12473877 - 12473704
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    |||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||| ||||||||||       |||||||||||||||||   |||    
T  12473877 ggatagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataa 12473778  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12473777 agtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtgg 12473704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 179 - 352
Target Start/End: Complemental strand, 12528286 - 12528113
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    |||||||||||||||| |||||||||||||||||||| ||||||| ||||||||| ||| ||||||||||       |||||||||||||||||   |||    
T  12528286 ggatagcacttgtgtaccataatggtatataccattgctcaattagaatgtgtcatgtgccacaccctttaaaaaaatatatcaaataaagcatctataa 12528187  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12528186 agtaacattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtatacaagtgg 12528113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 185 - 354
Target Start/End: Original strand, 35869575 - 35869744
Alignment:
Q  185 cacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaat 284  Q
    ||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||| ||||  ||  ||||     
T  35869575 cacttgtctaccataatggtatataccattgttcaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttatatagtaac 35869674  T
Q  285 attggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
    |||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35869675 attggtaggtggcacattataattggtcaatggtatataccattggtaccttaatggtacacaagtggaa 35869744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 179 - 354
Target Start/End: Complemental strand, 22343510 - 22343335
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    ||||| ||| |||||| |||||||||||||| ||||||||||||| ||||||||| |||||||| |||||       ||||||||||||||||||  |||    
T  22343510 ggatatcacctgtgtaccataatggtatatatcattgttcaattagaatgtgtcatgtggcacatcctttaaaataatatatcaaataaagcatttataa 22343411  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
     |||| |||| ||| || |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||    
T  22343410 agtaacattgatagatgacacactctaattggtcaatgatatataccattgataccttaatggtacacaagtggaa 22343335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 204 - 351
Target Start/End: Original strand, 33249397 - 33249544
Alignment:
Q  204 tatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacactc 303  Q
    |||||| ||||| ||||||| | |||| || ||||||||||||||       ||||||||||||||||||  ||| |||| ||||||||||| |||||||    
T  33249397 tatatatcattgctcaattagattgtgccatgtggcacaccctttaaaaatatatatcaaataaagcatttataaagtaacattggtaggtgacacactc 33249496  T
Q  304 taattggccaatggtatataccattggtaccttaatggtacacaagtg 351  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||    
T  33249497 taattggccaattgtatataccatttgtaccttaatggtacacaagtg 33249544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 181 - 351
Target Start/End: Original strand, 52910050 - 52910219
Alignment:
Q  181 atagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatg 280  Q
    ||||||||| |||| ||| |||||||||||||||| |||||||   |||| ||||||||| ||| |||       | ||||||||||||||||  ||| |    
T  52910050 atagcacttatgtaccattatggtatataccattgatcaattagggtgtgccacgtggcataccttttaatttttt-tatcaaataaagcatttataaag 52910148  T
Q  281 taatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 351  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||||    
T  52910149 taatattggtaggtggcacactttaattggccaatggtatataacattggtaccattatggtacacaagtg 52910219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 179 - 354
Target Start/End: Complemental strand, 51812087 - 51811912
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    ||||| ||||||| || ||||||||||||||||||| | |||||| |||||||||| |||||||||||||       ||||||||| |||  |||  |||    
T  51812087 ggataacacttgtatatcataatggtatataccattatccaattagaatgtgtcacatggcacaccctttaaaaaaatatatcaaaaaaaaaatttataa 51811988  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
     |||| |||||||||||||| ||||||||||||||||  |||||| | ||| |||||||||||||||| |||||||    
T  51811987 agtaacattggtaggtggcatactctaattggccaataatatatatctttgataccttaatggtacacgagtggaa 51811912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 196 - 354
Target Start/End: Complemental strand, 21260950 - 21260792
Alignment:
Q  196 cataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtg 295  Q
    |||||||||||||| ||||   |||||| |||||| || ||||||||||||||       ||||||||||||| ||||  ||| |||| |||||||||||    
T  21260950 cataatggtatataacattacccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaaacatttataaagtaacattggtaggtg 21260851  T
Q  296 gcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
     |||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||    
T  21260850 acacactctaattggccaatgatatatatcattggtaccttaatggtatataagtggaa 21260792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 179 - 354
Target Start/End: Complemental strand, 55590644 - 55590480
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    |||||||||||| ||| ||||||||||||| ||||||  |||||| |||||||||||||||||| |||||       ||||||||||||||             
T  55590644 ggatagcacttgcgtaccataatggtatattccattgcccaattagaatgtgtcacgtggcacatcctttaaaaaagtatatcaaataaag--------- 55590554  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
      ||| ||||||||||| |||||| ||||||  ||||| |||||||||||||||||||||||||||||||||||||    
T  55590553 --taacattggtaggtgacacactataattgatcaatgatatataccattggtaccttaatggtacacaagtggaa 55590480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 256 - 352
Target Start/End: Complemental strand, 52012874 - 52012778
Alignment:
Q  256 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||||||||| | ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  52012874 tatatcaaataaaacatttataaagtaacattggtatgtggcacacttttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 52012778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 266 - 360
Target Start/End: Original strand, 34829168 - 34829262
Alignment:
Q  266 aaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccccaa 360  Q
    ||||||||  ||| |||| ||||||||||| |||||| |||||||||| || |||||| ||||||||||||||| ||||| ||||| || |||||    
T  34829168 aaagcatttataaagtaacattggtaggtgacacactttaattggccattgatatatatcattggtaccttaatagtacataagtgaaatcccaa 34829262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 352
Target Start/End: Original strand, 9799438 - 9799534
Alignment:
Q  256 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    ||||| ||||||| ||||  ||| |||| ||||||| |||||||| |||  |||| ||||| |||||| ||||||||||||||||||| ||||||||    
T  9799438 tatattaaataaaacatttataaagtaacattggtatgtggcacattcttgttggtcaatgttatataacattggtaccttaatggtatacaagtgg 9799534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 293 - 348
Target Start/End: Complemental strand, 49998541 - 49998486
Alignment:
Q  293 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaa 348  Q
    ||||||||| |||||||||||||| ||||||  |||||||||||||||||||||||    
T  49998541 gtggcacaccctaattggccaatgatatataatattggtaccttaatggtacacaa 49998486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 248
Target Start/End: Complemental strand, 1796723 - 1796654
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacacccttt 248  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||| | |||| |||||| |||| |||||    
T  1796723 ggataacacttgtgtaccataatggtatataccattgtccaattaaattgtgccacgtgacacatccttt 1796654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 351
Target Start/End: Original strand, 49999663 - 49999758
Alignment:
Q  256 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 351  Q
    ||||||||||||||||||  |||  ||| ||||||| ||| ||||||||||||| ||||||  | ||| |||| ||| ||| ||||||||||||||    
T  49999663 tatatcaaataaagcatttataaaataacattggtatgtgacacactctaattgaccaatgacacataacattagtatcttgatggtacacaagtg 49999758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 35781083 - 35781021
Alignment:
Q  178 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggca 240  Q
    |||||| |||||| ||| ||||||||||||||||||||  |||||| |||||| |||||||||    
T  35781083 gggatatcacttgcgtaccataatggtatataccattgcccaattagaatgtgccacgtggca 35781021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 354
Target Start/End: Complemental strand, 33174560 - 33174516
Alignment:
Q  311 ccaatggtatataccattggta-ccttaatggtacacaagtggaa 354  Q
    ||||||||||||||  |||||| ||||||||||||||||||||||    
T  33174560 ccaatggtatatactcttggtaaccttaatggtacacaagtggaa 33174516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 9e-52; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 179 - 352
Target Start/End: Complemental strand, 2569209 - 2569037
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    |||||||||||||||||||||||| ||||||| ||||   ||||| |||||| ||| |||||||||||||       |||||||||||||||||||||||    
T  2569209 ggatagcacttgtgtaacataatgatatatactattgcctaattagaatgtgccacatggcacaccctttaaaaaa-tatatcaaataaagcattggtaa 2569111  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  2569110 tgtaacattggtaggtggcacactctaattggcaaatgatatataccattggtaccttaatggtacacaagtgg 2569037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 181 - 352
Target Start/End: Original strand, 29119324 - 29119495
Alignment:
Q  181 atagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatg 280  Q
    |||||| ||||||| ||||| ||||||||| ||||  |||||| |||||| || ||||||||||||||       |||||||||||||||||   ||| |    
T  29119324 atagcatttgtgtaccataagggtatatacaattgcccaattagaatgtgccatgtggcacaccctttaaaaaaatatatcaaataaagcatctataaag 29119423  T
Q  281 taatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29119424 taacaatgataggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 29119495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 183 - 354
Target Start/End: Complemental strand, 32676305 - 32676134
Alignment:
Q  183 agcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgta 282  Q
    |||| |||||||  |||||||||||||||||||| |||||| | |||| || ||||||||  ||||       ||||||||||||||||||  ||| |||    
T  32676305 agcatttgtgtactataatggtatataccattgtccaattagattgtgccatgtggcacatgctttaaaaaaatatatcaaataaagcatttataaagta 32676206  T
Q  283 atattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
    | ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32676205 acattggtaggtggtgcattctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 32676134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 178 - 352
Target Start/End: Original strand, 46435462 - 46435624
Alignment:
Q  178 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 277  Q
    ||||||| ||||||||| ||||||||||||||||||||  |||||| ||||||||| ||| ||||||||||       |||||||||||||||||   ||    
T  46435462 gggataggacttgtgtaccataatggtatataccattgcccaattagaatgtgtcatgtgacacaccctttaaaaatatatatcaaataaagcatctata 46435561  T
Q  278 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    |            ||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46435562 a------------aggtgacgcactctaattggccaattgtatataccattggtaccttaatggtacacaagtgg 46435624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 203 - 354
Target Start/End: Complemental strand, 8462277 - 8462127
Alignment:
Q  203 gtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacact 302  Q
    |||||||||||||| |||||| ||||||||||||||||| ||||||       ||||| ||||||| ||||  |||  ||| ||||||||||||||||||    
T  8462277 gtatataccattgtccaattaaaatgtgtcacgtggcacgccctttaaaaaagtatattaaataaaacatttataaaataacattggtaggtggcacact 8462178  T
Q  303 ctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
     ||||||  ||||| |||||||||||||||| |||||  |||||||||||||    
T  8462177 ataattgatcaatgatatataccattggtactttaat-atacacaagtggaa 8462127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 352
Target Start/End: Original strand, 8809715 - 8809811
Alignment:
Q  256 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  8809715 tatatcaaataaaacatttataaagtaacattggtacgtggcacactcttattggtcaatgttatataacattggtaccttaatggtacacaagtgg 8809811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 259 - 354
Target Start/End: Complemental strand, 25161402 - 25161307
Alignment:
Q  259 atcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
    |||||||||| ||||  ||| |||| |||| ||||||||||||| ||||||| ||||||||||||||||||  || ||||||||||||||||||||    
T  25161402 atcaaataaaacatttataaagtaacattgttaggtggcacactgtaattggtcaatggtatataccattgagactttaatggtacacaagtggaa 25161307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 280 - 354
Target Start/End: Original strand, 7214510 - 7214584
Alignment:
Q  280 gtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
    ||||||| | |||||| ||||||||||||| |||||  ||||||| ||| ||||||||||||||||||| |||||    
T  7214510 gtaatatcgataggtgacacactctaattgaccaataatatatactattagtaccttaatggtacacaaatggaa 7214584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 15387156 - 15387215
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtgg 238  Q
    ||||| ||||| |||| ||||||||||||||  |||||||||||| ||||||||||||||    
T  15387156 ggataacacttatgtaccataatggtatataatattgttcaattaaaatgtgtcacgtgg 15387215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 16679821 - 16679868
Alignment:
Q  303 ctaattggccaatggtatataccattggtaccttaatggtacacaagtg 351  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||||||||    
T  16679821 ctaattggc-aatagtatataacattggtaccttaatggtacacaagtg 16679868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 352
Target Start/End: Complemental strand, 35998311 - 35998252
Alignment:
Q  293 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    |||||||||||| |||   ||||| |||||| ||||||||||||||||||| ||||||||    
T  35998311 gtggcacactcttattaatcaatgttatataacattggtaccttaatggtatacaagtgg 35998252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 36771568 - 36771533
Alignment:
Q  180 gatagcacttgtgtaacataatggtatataccattg 215  Q
    |||||||||||||||| |||||||||||||||||||    
T  36771568 gatagcacttgtgtaatataatggtatataccattg 36771533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 178 - 351
Target Start/End: Original strand, 1211841 - 1212014
Alignment:
Q  178 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 277  Q
    |||||| |||||||||| ||||||||||||||||||||  | |||| |||||| |||||||||||||||||       ||||||||||||||||| | ||    
T  1211841 gggatatcacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaccctttaaaaaaatatatcaaataaagcatcgata 1211940  T
Q  278 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 351  Q
    | |||| ||||  ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1211941 aagtaacattgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggtacacaagtg 1212014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 179 - 352
Target Start/End: Original strand, 5403874 - 5404047
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| ||||||||| |||  || ||||||       ||||||||||||| |||   |||    
T  5403874 ggatagcacttgtgtaccataatggtatataccattgtccaattagaatgtgtcatgtgatacgccctttaaaaaaatatatcaaataaaacatctataa 5403973  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
     |||| |||||||||||||| ||||||| || |||||  ||||||||||| |||||||||||||||||||||||    
T  5403974 agtaacattggtaggtggcagactctaactgaccaataatatataccattagtaccttaatggtacacaagtgg 5404047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 179 - 354
Target Start/End: Original strand, 32644836 - 32645009
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    |||||||||||||||| |||||||||||||||||||||||||||| | ||| ||| ||||||||||||||       |||| ||||||||| |||  |||    
T  32644836 ggatagcacttgtgta-cataatggtatataccattgttcaattagattgtatcatgtggcacaccctttaaaaaaatataacaaataaagtatt-ttaa 32644933  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
     |||| ||| ||||||| |||||  ||||||||||||| ||||||| || | || |||||||||||||| ||||||    
T  32644934 agtaacatttgtaggtgacacaccttaattggccaatgatatatactatcgatatcttaatggtacacaggtggaa 32645009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 287 - 357
Target Start/End: Complemental strand, 11753232 - 11753162
Alignment:
Q  287 tggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccc 357  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  11753232 tggtaggtgggacactctaattggccgatggtatataccattggtaccttaatggtacacaagtggtaccc 11753162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 352
Target Start/End: Complemental strand, 34245663 - 34245567
Alignment:
Q  256 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    |||||||||||||| |||  ||| |||| ||||||| |||||||||| | ||||| ||||| |||||| ||||  ||||||||||||||||||||||    
T  34245663 tatatcaaataaagtatttataaagtaacattggtacgtggcacacttttattggtcaatgttatataacattaataccttaatggtacacaagtgg 34245567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 10503256 - 10503301
Alignment:
Q  178 gggatagcacttgtgtaacataatggtatataccattgttcaatta 223  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  10503256 gggatagcacttgtgtaccataatggtatataccattgtccaatta 10503301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 259 - 351
Target Start/End: Complemental strand, 11113649 - 11113557
Alignment:
Q  259 atcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 351  Q
    ||||||||||||| |   || |||| ||| ||| ||| |||||||| ||| | ||||| |||||| |||||||||||||||||||||||||||    
T  11113649 atcaaataaagcacttacaaagtaacattagtatgtgacacactcttattagtcaatgttatatagcattggtaccttaatggtacacaagtg 11113557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 26526385 - 26526436
Alignment:
Q  197 ataatggtatataccattgttcaattataatgtgtcacgtggcacacccttt 248  Q
    |||||||||| ||| |||||||||||| ||||||||||||| ||||||||||    
T  26526385 ataatggtatctactattgttcaattagaatgtgtcacgtgacacacccttt 26526436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 179 - 354
Target Start/End: Complemental strand, 35341709 - 35341534
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    ||||| ||||| | || ||||||| |||||| |||||| |||||| ||||||||||||||||||||||||       ||||||||||||| ||||  |||    
T  35341709 ggataacacttatctaccataatgatatatatcattgtccaattagaatgtgtcacgtggcacaccctttaaaaaagtatatcaaataaaacatttataa 35341610  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
     |||| |||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  35341609 agtaacattggtaggtggcacactataattggtcaatggtatatatcattggtaccttaatggtacacaagtggaa 35341534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 179 - 352
Target Start/End: Complemental strand, 48250329 - 48250154
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtg--gcacaccctttnnnnnnntatatcaaataaagcattggt 276  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| |||||| ||| ||  ||| |||||||        ||||||||||||||||   |    
T  48250329 ggatagcacttgtgtaccataatggtatataccattgtccaattagaatgtgacacatgtagcataccctttaaaaaaaaatatcaaataaagcatctat 48250230  T
Q  277 aatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    || |||| ||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||    
T  48250229 aaagtaacattggtaggtggcacactctaattgaccaatgatatatatcattggtaccttaatggtacacaagtgg 48250154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 179 - 354
Target Start/End: Complemental strand, 48072560 - 48072387
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    |||||||||||||||| ||||||||||||||||||||  |||||| |||||| |||||||||||||||||       || ||||||||||  |||  |||    
T  48072560 ggatagcacttgtgtaccataatggtatataccattgcccaattagaatgtgccacgtggcacaccctttaaaaaaatacatcaaataaaatatttataa 48072461  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
      ||| ||||  | |||||||||||||||||  ||||||  ||||| |||||||||||||| ||||||||||||||    
T  48072460 aataacattgaaatgtggcacactctaattgatcaatgg--tatactattggtaccttaatagtacacaagtggaa 48072387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 179 - 328
Target Start/End: Original strand, 32694568 - 32694717
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    ||||||||||||||||  |||||||||||||||||||   ||||| ||||||||||||||||||||||||       |||||||||||||| |||  |||    
T  32694568 ggatagcacttgtgtactataatggtatataccattgcctaattagaatgtgtcacgtggcacaccctttaaaaaaatatatcaaataaagaatttataa 32694667  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtatataccatt 328  Q
     |||| |||| ||| ||| |||||||||||  ||||||||||||| ||||    
T  32694668 agtaacattgatagatgggacactctaatttaccaatggtatatatcatt 32694717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 259 - 348
Target Start/End: Original strand, 31306951 - 31307041
Alignment:
Q  259 atcaaataaagcattggtaatgtaatattggtaggtggcacactct-aattggccaatggtatataccattggtaccttaatggtacacaa 348  Q
    |||||||||||||||  ||| |||| |||||||||| ||||||| | |||||| ||||| |||||| ||||| ||| ||||||||||||||    
T  31306951 atcaaataaagcatttataaagtaacattggtaggtagcacactttaaattggacaatgatatatatcattgatactttaatggtacacaa 31307041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 40857000 - 40856949
Alignment:
Q  197 ataatggtatataccattgttcaattataatgtgtcacgtggcacacccttt 248  Q
    ||||||||||||| |||||| |||||| ||||||||| ||||||||||||||    
T  40857000 ataatggtatatatcattgtccaattagaatgtgtcatgtggcacacccttt 40856949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 351
Target Start/End: Original strand, 36776062 - 36776120
Alignment:
Q  293 gtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 351  Q
    ||||||||||||||||  |||||| |||||| ||  |||||||||||||||| ||||||    
T  36776062 gtggcacactctaattcaccaatgttatataacagcggtaccttaatggtacgcaagtg 36776120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 352
Target Start/End: Original strand, 40893116 - 40893213
Alignment:
Q  256 tatatcaaataaa-gcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    ||||||||||||| |||||  ||| |||| |||| ||| ||  ||| |||||||| ||||||||||||||||||  ||| || |||||| ||||||||    
T  40893116 tatatcaaataaaagcatttataaagtaacattgatagatgagacattctaattgaccaatggtatataccattaatactttgatggtatacaagtgg 40893213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 352
Target Start/End: Complemental strand, 40856456 - 40856392
Alignment:
Q  288 ggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    |||||||| |||||||||||||  ||||  |||||| |||| ||||||||||| |||| ||||||    
T  40856456 ggtaggtgacacactctaattgatcaataatatatatcattagtaccttaatgatacataagtgg 40856392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 178 - 352
Target Start/End: Original strand, 24337827 - 24338001
Alignment:
Q  178 gggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggta 277  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||| ||||||  | ||||||||||||||       |||||||||||||||||   ||    
T  24337827 gggatagcacttgtgtaccataatggtatataccattgtccaattagaatgtgctatgtggcacaccctttaaaaatatatatcaaataaagcatctata 24337926  T
Q  278 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    | |||| |||||||| |||||||||||||||| || |||||||||||||||| ||||||||| ||||||||||||    
T  24337927 aagtaacattggtagatggcacactctaattgaccgatggtatataccattgctaccttaatagtacacaagtgg 24338001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 179 - 354
Target Start/End: Original strand, 11254026 - 11254200
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    |||||||| ||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||       ||||||||||||| ||||  |||    
T  11254026 ggatagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataa 11254125  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
     |||| |||||||||||| | ||| ||| ||| ||||| |||||| ||||||||  ||||||||||||||||||||    
T  11254126 agtaacattggtaggtggtatactataa-tggtcaatgatatatatcattggtaatttaatggtacacaagtggaa 11254200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 185 - 360
Target Start/End: Original strand, 41179567 - 41179742
Alignment:
Q  185 cacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaat 284  Q
    |||||||||| ||||||||||||||||||||  |||||| |||||| || |||||||| || ||       ||||| ||||||| ||||  ||| ||||     
T  41179567 cacttgtgtaccataatggtatataccattgcccaattagaatgtgccatgtggcacatccattaaaaaaatatattaaataaaacatttataaagtaac 41179666  T
Q  285 attggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaaccccaa 360  Q
    || |||||||| |||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||    
T  41179667 atcggtaggtgacacactttaattggccaatgatatatatcattggtaccttaatggtacacaagtggaatcccaa 41179742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 179 - 345
Target Start/End: Complemental strand, 18168559 - 18168392
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnn-tatatcaaataaagcattggta 277  Q
    ||||||||  |||||| ||||||||||||||  |||    ||||| | |||||||||||||||| |||||        |||||||||||||| |||  ||    
T  18168559 ggatagcatctgtgtaccataatggtatatattattacctaattagattgtgtcacgtggcacatcctttaaaaaaaatatatcaaataaagtatttata 18168460  T
Q  278 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtaca 345  Q
    | |||| |||||||||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  18168459 aagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtaca 18168392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 179 - 345
Target Start/End: Complemental strand, 18632116 - 18631949
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnn-tatatcaaataaagcattggta 277  Q
    ||||||||  |||||| ||||||||||||||  |||    ||||| | |||||||||||||||| |||||        |||||||||||||| |||  ||    
T  18632116 ggatagcatctgtgtaccataatggtatatattattacctaattagattgtgtcacgtggcacatcctttaaaaaaaatatatcaaataaagtatttata 18632017  T
Q  278 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtaca 345  Q
    | |||| |||||||||||| ||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  18632016 aagtaagattggtaggtgggacactctaattgatcaatgatatataccattggtaccttaatggtaca 18631949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 202 - 344
Target Start/End: Original strand, 4708328 - 4708470
Alignment:
Q  202 ggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaatgtaatattggtaggtggcacac 301  Q
    |||| |||||||||   ||||| |||||| |||||||||||||||||       ||||||||||||| ||||  ||| |||| ||||||||||| |||||    
T  4708328 ggtaaataccattgcctaattagaatgtgccacgtggcacaccctttaaaaatatatatcaaataaaacatttataaagtaacattggtaggtgacacac 4708427  T
Q  302 tctaattggccaatggtatataccattggtaccttaatggtac 344  Q
    | ||||||||  ||| ||||| |||||||||||||| ||||||    
T  4708428 tttaattggcgcatgatatatgccattggtaccttagtggtac 4708470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 256 - 352
Target Start/End: Complemental strand, 1514899 - 1514803
Alignment:
Q  256 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    ||||||||||||| ||||  ||| |||| ||||||| |||| ||||||| ||||  ||||| |||||| ||||||||||||||||||||||||||||    
T  1514899 tatatcaaataaaacatttataaagtaacattggtatgtggtacactcttattgatcaatgttatataacattggtaccttaatggtacacaagtgg 1514803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 351
Target Start/End: Original strand, 32825954 - 32826005
Alignment:
Q  300 actctaattggccaatggtatataccattggtaccttaatggtacacaagtg 351  Q
    |||||||||||||||||||||| | ||||| ||| |||||||||||||||||    
T  32825954 actctaattggccaatggtatacaacattgatactttaatggtacacaagtg 32826005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 179 - 351
Target Start/End: Original strand, 13003 - 13176
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcaca-ccctttnnnnnnntatatcaaataaagcattggta 277  Q
    |||||||||||||||| ||||||||||||||||||||  | |||| |||||| ||||||||||| ||||||       ||||||||||||||||| | ||    
T  13003 ggatagcacttgtgtaccataatggtatataccattgccccattagaatgtgccacgtggcacaaccctttaaaaaaatatatcaaataaagcatcgata 13102  T
Q  278 atgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 351  Q
    | |||| ||||  ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13103 aagtaacattgaaaggtggcacacactaattagccaatggtatataccattggtaccttaatggtacacaagtg 13176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 179 - 354
Target Start/End: Complemental strand, 34365 - 34192
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    |||||||| ||||||| ||||| |||||||| |||| | |||||| ||||||||||||| ||||||||||       |||||||||||||  |||  |||    
T  34365 ggatagcatttgtgtaccataa-ggtatataacattatccaattagaatgtgtcacgtgacacaccctttaaaaaa-tatatcaaataaaatatttataa 34268  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
     |||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  34267 agtaatattggtaagtggcacactctaattggccaataatatataccattggtaccttaatggtacacaagtggaa 34192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 179 - 354
Target Start/End: Complemental strand, 11367 - 11193
Alignment:
Q  179 ggatagcacttgtgtaacataatggtatataccattgttcaattataatgtgtcacgtggcacaccctttnnnnnnntatatcaaataaagcattggtaa 278  Q
    |||||||| ||||||| |||||||||||||||||||| ||| ||| ||||||||||||||||||||||||       ||||||||||||| ||||  |||    
T  11367 ggatagcatttgtgtaccataatggtatataccattgctcagttagaatgtgtcacgtggcacaccctttaaaaatgtatatcaaataaaacatttataa 11268  T
Q  279 tgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtggaa 354  Q
     |||| |||||||||||| | ||| ||| ||| ||||| |||||| ||||||||  ||||||||||||||||||||    
T  11267 agtaacattggtaggtggtatactataa-tggtcaatgatatatatcattggtaatttaatggtacacaagtggaa 11193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 23142 - 23094
Alignment:
Q  303 ctaattggccaatggtatataccattggtaccttaatggtacacaagtg 351  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  23142 ctaattggccaatagtatataccattggtaccttaatgatacacaagtg 23094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 351
Target Start/End: Original strand, 23174 - 23263
Alignment:
Q  256 tatatcaaataaagcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtg 351  Q
    |||||||||||||  |||  ||| |||| |||||||||||||||||||||||||||||||| ||||      | ||||||||||||||||||||||    
T  23174 tatatcaaataaaatatttataaagtaaaattggtaggtggcacactctaattggccaatgatata------tcgtaccttaatggtacacaagtg 23263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 352
Target Start/End: Complemental strand, 73168 - 73071
Alignment:
Q  256 tatatcaaataaa-gcattggtaatgtaatattggtaggtggcacactctaattggccaatggtatataccattggtaccttaatggtacacaagtgg 352  Q
    ||||||||||||| |||||  ||| |||| |||| ||| ||  ||| |||||||| ||||||||||||||||||  ||| || |||||| ||||||||    
T  73168 tatatcaaataaaagcatttataaagtaacattgatagatgagacattctaattgaccaatggtatataccattaatactttgatggtatacaagtgg 73071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University