View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12557_high_7 (Length: 292)

Name: NF12557_high_7
Description: NF12557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12557_high_7
NF12557_high_7
[»] chr1 (11 HSPs)
chr1 (1-292)||(48652922-48653213)
chr1 (1-292)||(48618242-48618533)
chr1 (1-292)||(11547033-11547324)
chr1 (1-186)||(48656370-48656555)
chr1 (47-176)||(48639745-48639874)
chr1 (5-171)||(48628672-48628838)
chr1 (76-189)||(48585201-48585314)
chr1 (47-165)||(48661397-48661515)
chr1 (47-165)||(48666992-48667110)
chr1 (234-292)||(48628901-48628959)
chr1 (210-292)||(48656579-48656661)
[»] chr3 (1 HSPs)
chr3 (1-292)||(19665598-19665889)
[»] chr8 (2 HSPs)
chr8 (1-183)||(27223778-27223960)
chr8 (1-183)||(27227969-27228151)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 48652922 - 48653213
Alignment:
Q  1 atcactcttaacaaaatcaccacggatattgtttgcacctttaatgtttgggttgttaaacaatggaccaatgggtcttatgaggattgatttgtttgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48652922 atcactcttaacaaaatcaccacggatattgtttgcacctttaatgtttgagttgttaaacaatggaccaatgggtcttatgaggattgatttgtttgaa 48653021  T
Q  101 atatagtcaatgaaatcatgctctagttcttcataggtttctactaaaacacaaaatactttagataagttcttaatttgttctaagacgaggctcgcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  || |||    
T  48653022 atatagtcaatgaaatcatgctctagttcttcataggtttctactaaaacacaaaatactttagataaattcttaatttgttctaagacgagtgtcccaa 48653121  T
Q  201 atgatagaaatgtactaaaaggatgcagaaatcctgggatttcattatgtttaagaactacaaaaggtaattgaacatcaatataaggttct 292  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48653122 atgatagaaatgtactaaaaggatgcagaaaatctgggatttcattatgtttaagaactacaaaaggtaattgaacatcaatataaggttct 48653213  T

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Target: chr1; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 48618533 - 48618242
Alignment:
Q  1 atcactcttaacaaaatcaccacggatattgtttgcacctttaatgtttgggttgttaaacaatggaccaatgggtcttatgaggattgatttgtttgaa 100  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||| ||  |||| ||| ||||||    
T  48618533 atcactcttaacaaaatctccacgaatattttttgcacctttaatatttggattgtgaaacaatggaccaatgggtcttacgaaaattgttttttttgaa 48618434  T
Q  101 atatagtcaatgaaatcatgctctagttcttcataggtttctactaaaacacaaaatactttagataagttcttaatttgttctaagacgaggctcgcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||  |||||||||| |||  || | |    
T  48618433 atatagtcaatgaaatcatgctctagttcttcataggtttctactaaaacacaaaatactttagacaaattcttaaactgttctaagatgagtgtcccta 48618334  T
Q  201 atgatagaaatgtactaaaaggatgcagaaatcctgggatttcattatgtttaagaactacaaaaggtaattgaacatcaatataaggttct 292  Q
       || |||||  |||||||||||| |||||  ||||||||||||| | ||||||||||  |||||||||||||||||||||||||||||||    
T  48618333 gaaatggaaattgactaaaaggatgaagaaaatctgggatttcattgtatttaagaacttgaaaaggtaattgaacatcaatataaggttct 48618242  T

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Target: chr1; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 11547033 - 11547324
Alignment:
Q  1 atcactcttaacaaaatcaccacggatattgtttgcacctttaatgtttgggttgttaaacaatggaccaatgggtcttatgaggattgatttgtttgaa 100  Q
    |||||||||||||||||| ||||| |||||  ||||||||||||| ||||| || ||||||||||||||||| ||||||||| |||| ||||| |||| |    
T  11547033 atcactcttaacaaaatctccacgaatattacttgcacctttaatatttggatttttaaacaatggaccaataggtcttatgtggatggatttttttgta 11547132  T
Q  101 atatagtcaatgaaatcatgctctagttcttcataggtttctactaaaacacaaaatactttagataagttcttaatttgttctaagacgaggctcgcaa 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||  |||||||||| |||  || | |    
T  11547133 atatagtcaatgaaatcatgttctagttcttcataggtttctactaaaacacaaaacactttagataaattcttaaactgttctaagatgagtgtcccta 11547232  T
Q  201 atgatagaaatgtactaaaaggatgcagaaatcctgggatttcattatgtttaagaactacaaaaggtaattgaacatcaatataaggttct 292  Q
       || || ||| |||||||||||| |||||  ||||||||||||| | |||||| |||  |||||||||||||||||||||||||||||||    
T  11547233 gaaatggatatggactaaaaggatgaagaaaatctgggatttcattgtatttaaggacttgaaaaggtaattgaacatcaatataaggttct 11547324  T

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Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 48656370 - 48656555
Alignment:
Q  1 atcactcttaacaaaatcaccacggatattgtttgcacctttaatgtttgggttgttaaacaatggaccaatgggtcttatgaggattgatttgtttgaa 100  Q
    |||| ||||||||||||||| ||| |||||  |||||||| | |||||||||||||| ||||  |||||||| |||||||||| |||||| || |  |||    
T  48656370 atcagtcttaacaaaatcacgacgaatattacttgcacctattatgtttgggttgttgaacaccggaccaattggtcttatgatgattgacttttccgaa 48656469  T
Q  101 atatagtcaatgaaatcatgctctagttcttcataggtttctactaaaacacaaaatactttagataagttcttaatttgttctaa 186  Q
    ||||| || || |||||| ||||||||||||||||||| || || || ||||| ||| ||||||| || |||||||||||| ||||    
T  48656470 atataatcgataaaatcaggctctagttcttcataggtatccacaaatacacacaatgctttagacaaattcttaatttgtcctaa 48656555  T

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Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 47 - 176
Target Start/End: Original strand, 48639745 - 48639874
Alignment:
Q  47 tttgggttgttaaacaatggaccaatgggtcttatgaggattgatttgtttgaaatatagtcaatgaaatcatgctctagttcttcataggtttctacta 146  Q
    ||||| || |||||| | |||||||| |||||||||  ||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || ||||    
T  48639745 tttggattcttaaacgaaggaccaataggtcttatggtgattgatttttttgaaatataatctatgaaatcatgctctagttcttcataggtatccacta 48639844  T
Q  147 aaacacaaaatactttagataagttcttaa 176  Q
    | |||||||| |||||||| |||| |||||    
T  48639845 atacacaaaacactttagacaagtccttaa 48639874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 171
Target Start/End: Original strand, 48628672 - 48628838
Alignment:
Q  5 ctcttaacaaaatcaccacggatattgtttgcacctttaatgtttgggttgttaaacaatggaccaatgggtcttatgaggattgatttgtttgaaatat 104  Q
    ||||||||||||||||| || |||||| ||||  |||| ||  ||||||| || ||||  |||||||||||||| ||||||| |||||| || |||| ||    
T  48628672 ctcttaacaaaatcacctcgaatattgcttgctgcttttattgttgggttcttgaacagaggaccaatgggtctaatgaggactgattttttggaaagat 48628771  T
Q  105 agtcaatgaaatcatgctctagttcttcataggtttctactaaaacacaaaatactttagataagtt 171  Q
    | || ||||||||||||||||||||||||||||| ||  |||| |||||||||| ||| || |||||    
T  48628772 aatcgatgaaatcatgctctagttcttcataggtatccgctaatacacaaaatattttggacaagtt 48628838  T

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Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 189
Target Start/End: Original strand, 48585201 - 48585314
Alignment:
Q  76 tcttatgaggattgatttgtttgaaatatagtcaatgaaatcatgctctagttcttcataggtttctactaaaacacaaaatactttagataagttctta 175  Q
    ||||||| |||||||||| || |||||||| || ||||| ||||||||||||||||||||||| || ||||| |||||||| ||||||||||||| ||||    
T  48585201 tcttatggggattgattttttcgaaatataatctatgaattcatgctctagttcttcataggtatccactaatacacaaaacactttagataagtcctta 48585300  T
Q  176 atttgttctaagac 189  Q
    |  | |||||||||    
T  48585301 aactcttctaagac 48585314  T

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Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 165
Target Start/End: Original strand, 48661397 - 48661515
Alignment:
Q  47 tttgggttgttaaacaatggaccaatgggtcttatgaggattgatttgtttgaaatatagtcaatgaaatcatgctctagttcttcataggtttctacta 146  Q
    ||||| || |||||||| |||||||   ||||||||  ||||||||| ||||||||||| || |||||||||||||||| ||||||| |||| || ||||    
T  48661397 tttggattcttaaacaaaggaccaacatgtcttatggtgattgatttttttgaaatataatcgatgaaatcatgctctaattcttcaaaggtatccacta 48661496  T
Q  147 aaacacaaaatactttaga 165  Q
    | |||||||| ||||||||    
T  48661497 atacacaaaacactttaga 48661515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 165
Target Start/End: Original strand, 48666992 - 48667110
Alignment:
Q  47 tttgggttgttaaacaatggaccaatgggtcttatgaggattgatttgtttgaaatatagtcaatgaaatcatgctctagttcttcataggtttctacta 146  Q
    ||||| || |||||||| ||||||| ||||||||||  ||||||||| |  |||||||| || |||||||||||||||| ||||||| |||| || ||||    
T  48666992 tttggatttttaaacaaaggaccaacgggtcttatggcgattgatttttccgaaatataatcgatgaaatcatgctctaattcttcaaaggtatccacta 48667091  T
Q  147 aaacacaaaatactttaga 165  Q
    | |||||||| ||||||||    
T  48667092 atacacaaaacactttaga 48667110  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 292
Target Start/End: Original strand, 48628901 - 48628959
Alignment:
Q  234 ctgggatttcattatgtttaagaactacaaaaggtaattgaacatcaatataaggttct 292  Q
    ||||||||||||| | |||||| |||| |||||| || |||||||||||||||||||||    
T  48628901 ctgggatttcattgtatttaaggactataaaaggcaaatgaacatcaatataaggttct 48628959  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 292
Target Start/End: Original strand, 48656579 - 48656661
Alignment:
Q  210 atgtactaaaaggatgcagaaatcctgggatttcattatgtttaagaactacaaaaggtaattgaacatcaatataaggttct 292  Q
    ||||| || ||||||||||||   | || |||||| | |||||||| |||||| |||| ||||||||||||||| ||||||||    
T  48656579 atgtattagaaggatgcagaagaacaggaatttcactgtgtttaaggactacagaaggcaattgaacatcaatacaaggttct 48656661  T

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Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 19665889 - 19665598
Alignment:
Q  1 atcactcttaacaaaatcaccacggatattgtttgcacctttaatgtttgggttgttaaacaatggaccaatgggtcttatgaggattgatttgtttgaa 100  Q
    ||||||||||||||||||||| || ||||   | |||| |||||| ||||| || |||||||||||||| || || ||| | ||||||||||| || |||    
T  19665889 atcactcttaacaaaatcaccgcgaatatcactcgcacatttaatctttggattattaaacaatggaccgattggccttgtaaggattgattttttcgaa 19665790  T
Q  101 atatagtcaatgaaatcatgctctagttcttcataggtttctactaaaacacaaaatactttagataagttcttaatttgttctaagacgaggctcgcaa 200  Q
    |||||||| ||| |||||||||||||||| |||||  | || || || |||||||| ||||||||||| |||||||  |||||||| | |||  || | |    
T  19665789 atatagtcgatgtaatcatgctctagttcatcataactatccaccaatacacaaaacactttagataaattcttaaactgttctaaaatgagtgtcccta 19665690  T
Q  201 atgatagaaatgtactaaaaggatgcagaaatcctgggatttcattatgtttaagaactacaaaaggtaattgaacatcaatataaggttct 292  Q
       ||  | || ||||||||||||| |||||  | || ||||| |||||||||||| |||| |||||||||||| |||||||||||||||||    
T  19665689 gaaatgaatatttactaaaaggatgtagaaaatccggtatttcgttatgtttaagagctacgaaaggtaattgagcatcaatataaggttct 19665598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 27223778 - 27223960
Alignment:
Q  1 atcactcttaacaaaatcaccacggatattgtttgcacctttaatgtttgggttgttaaacaatggaccaatgggtcttatgaggattgatttgtttgaa 100  Q
    ||||||||||||||||||||||| ||||||  |||||  |||||| | |||||| |||||||| |||||||| ||||||||   || ||| || || |||    
T  27223778 atcactcttaacaaaatcaccacagatattacttgcatttttaatttgtgggtttttaaacaaaggaccaataggtcttattttgactgaatttttagaa 27223877  T
Q  101 atatagtcaatgaaatcatgctctagttcttcataggtttctactaaaacacaaaatactttagataagttcttaatttgttc 183  Q
    | |||||| ||||||||||| |||||||| ||||| || || || || |||||||| |||||||| |||||||||||||||||    
T  27223878 acatagtcgatgaaatcatgttctagttcctcatacgtatcaaccaatacacaaaacactttagacaagttcttaatttgttc 27223960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 27227969 - 27228151
Alignment:
Q  1 atcactcttaacaaaatcaccacggatattgtttgcacctttaatgtttgggttgttaaacaatggaccaatgggtcttatgaggattgatttgtttgaa 100  Q
    |||||||||||| |||||||||| ||||||  |||||  |||  | |||||||| | ||| || ||||||||||||||||| | ||  || |  ||||||    
T  27227969 atcactcttaactaaatcaccacagatattacttgcagtttttgtttttgggttttgaaataaaggaccaatgggtcttattaagacagaatattttgaa 27228068  T
Q  101 atatagtcaatgaaatcatgctctagttcttcataggtttctactaaaacacaaaatactttagataagttcttaatttgttc 183  Q
    ||||| |  ||||||||||| || | ||| |||||||| || || || |||||||| |||||||| ||||||||||| |||||    
T  27228069 atataatttatgaaatcatgttccaattcctcataggtatccaccaatacacaaaacactttagacaagttcttaatctgttc 27228151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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