View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12557_low_1 (Length: 580)
Name: NF12557_low_1
Description: NF12557
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12557_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 109 - 558
Target Start/End: Complemental strand, 42239562 - 42239106
Alignment:
| Q |
109 |
atgtttggtacatatatgttttagtgcgaacaaagtagttttggtaggatgaagaaggtggtgtaaac--------ttccttcattccaaactctgattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
42239562 |
atgtttggtacatatatgttttagtgcgaacaaagtagttttggtaggatgaagaaggtggtgtaaacaatttagattccttcaatccaaactctgattg |
42239463 |
T |
|
| Q |
201 |
ttcctacaaattagaaatgannnnnnnagggtttgggtgggccacggcccatccaagccaatgaatggctccgccactgtgcactgccatcatgtgtgca |
300 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42239462 |
ttccaacaaattagaaatgatttttt-agggtttgggtgggccacggcccatccaagccaatgaatggctccgccactgtgcactgccatcatgtgtgca |
42239364 |
T |
|
| Q |
301 |
aatatttacacctaacaaaagaaatgttaataacacaaatattaagaaattggaccttttgataatggaatttgatgaaattgatcatcatcaaaattga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
42239363 |
aatatttacacctaacaaaagaaatgttaataacacaaatattaagaaattggaccttttgataatggaatttgatgaaattgatcgtgatcaaaattga |
42239264 |
T |
|
| Q |
401 |
atcctttttcgcccagaaattgttgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagaccg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42239263 |
atcctttttcgcccagaaattgttgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagaccg |
42239164 |
T |
|
| Q |
501 |
aatacattgacacaatcaattttctagtcccttttttcagtcatccttcatagttgtg |
558 |
Q |
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| T |
42239163 |
aatacattgacacaatcaattttctagtcccttttttcagtcatccttcatagttgtg |
42239106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 302 - 542
Target Start/End: Complemental strand, 17649959 - 17649719
Alignment:
| Q |
302 |
atatttacacctaacaaaagaaatgttaataacacaaatattaagaaa---ttggacctttt-gataatggaatttgatgaaattgatcatcatcaaaat |
397 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||| |||||||||| |||| |||||||||||| ||| | | |
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| T |
17649959 |
atatttacacctaacaaaataaatgttaataacacaaatattaaaaaaaaattggacctttttgataatggaacttgacgaaattgatcatgatccag-t |
17649861 |
T |
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| Q |
398 |
tgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcctgctgtgagttttgctctcttccaaatatgtttaatgacactaacagaga |
497 |
Q |
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| |||||||||||||||| || |||||||||| |||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
17649860 |
tcaatcctttttcgcccacaatttgttgttttcctatgagacacatctcctg---tgagtttttctctcttccaaatacgtttaatgacactaacagaga |
17649764 |
T |
|
| Q |
498 |
ccgaatacattgacacaatcaattttctagtcccttttttcagtc |
542 |
Q |
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| T |
17649763 |
ctgaatacattgacgcaatcaattttctagtcccttttttcagtc |
17649719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 349 - 558
Target Start/End: Complemental strand, 1328710 - 1328504
Alignment:
| Q |
349 |
attggacctttt-gataatggaatttgatgaaattgatcatcatcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcc |
447 |
Q |
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|||||||||||| |||||||||| |||| |||||||||||| ||| | || |||||||||||||||| || |||||||||| |||||||||||||||| |
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| T |
1328710 |
attggacctttttgataatggaacttgaagaaattgatcatgatccag-ttcaatcctttttcgcccacaatttgttgttttcctatgagacacatctcc |
1328612 |
T |
|
| Q |
448 |
tgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagaccgaatacattgacacaatcaattttctagtcccttttttcagtcatcct |
547 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
1328611 |
tg---tgagttttgctctcttccaaatacgtttaatgacactaacagagactgaatacattgacgcaatcaattttctagtcccttttttcagtcttcct |
1328515 |
T |
|
| Q |
548 |
tcatagttgtg |
558 |
Q |
| |
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||| |||||| |
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| T |
1328514 |
acatggttgtg |
1328504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 36147894 - 36147922
Alignment:
| Q |
23 |
ctatataagtgaaaaatgaatgctttttc |
51 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
36147894 |
ctatataagtgaaaaatgaatgctttttc |
36147922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 349 - 547
Target Start/End: Original strand, 42540845 - 42541040
Alignment:
| Q |
349 |
attggacctttt-gataatggaatttgatgaaattgatcatcatcaaaattgaatcctttttcgcccagaaattgttgtttttgtatgagacacatctcc |
447 |
Q |
| |
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|||||||||||| |||||||||| |||| |||||||||||| ||| | || |||||||||||||||| || |||||||||| |||||||||||||||| |
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| T |
42540845 |
attggacctttttgataatggaacttgaagaaattgatcatgatccag-ttcaatcctttttcgcccacaatttgttgttttcctatgagacacatctcc |
42540943 |
T |
|
| Q |
448 |
tgctgtgagttttgctctcttccaaatatgtttaatgacactaacagagaccgaatacattgacacaatcaattttctagtcccttttttcagtcatcct |
547 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
42540944 |
tg---tgagttttgctctcttccaaatacgtttaatgacactaacagagactgaatacattgacgcaatcaattttctagtcccttttttcagtcttcct |
42541040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 495 - 547
Target Start/End: Complemental strand, 4745952 - 4745900
Alignment:
| Q |
495 |
agaccgaatacattgacacaatcaattttctagtcccttttttcagtcatcct |
547 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
4745952 |
agactgaatacattgacgcaatcaattttctagtcccttttttcagtcttcct |
4745900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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