View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12558_high_1 (Length: 738)
Name: NF12558_high_1
Description: NF12558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12558_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 212 - 720
Target Start/End: Complemental strand, 35159663 - 35159155
Alignment:
| Q |
212 |
aagcacctgagaaaccatgtctcaaatgcatcaaccatcaaactcaataaaccatcacagtaacatatattgttttgggatgtagtacatgcttcgagtt |
311 |
Q |
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| T |
35159663 |
aagcacgtgagaaaccatgtctcaaatgcatcaaccatcaaactcaataaaccatcaaaataacatatattgttttgggatgtagtacatgcttcgagtt |
35159564 |
T |
|
| Q |
312 |
tttctcaacttgataatactcctacggtcatattcaagcctatgtacatcattcacacacaaagaaagtagtagttttcatttttccattgatgagataa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
35159563 |
tttctcaacttgataatactcctacggtcatattcaagcctatgtacatcattcacacacaaagagagtagtaattttcatttttccattgatgagataa |
35159464 |
T |
|
| Q |
412 |
ccatcacagtagatgacatgtcatgtttgttgcacttgcctatccacagtaggttgatgaaacattcttcgccattgtccaaagaagacgacgttgagtt |
511 |
Q |
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| T |
35159463 |
ccatcacagtagatgacatgtcatgtttgttgcacttgcctatccacagtaggttgatgaaacattcttcgccattgtccaaagaacacgacgttgagtt |
35159364 |
T |
|
| Q |
512 |
gttaggtgagttacttggtcgggacttagaagatttcataatgagtgggaaaggttgaaagatgttcacataacctttagctggctacatccagtcttcc |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35159363 |
gttaggtgagttacttggtcgggacttagaagatttcataatgagtgggaaaggttgaaagatgttcacataacctttagctggctacatccagtcttcc |
35159264 |
T |
|
| Q |
612 |
tcgatcatcataccaaaaccttgcagttcgaaagtgaaccagggtcgaaggctgtcagaaatggacacatgactaggtgtatcaaaacttacctacttta |
711 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35159263 |
tcgatcatcataccaaaaccttgcagttcgaaagtgaaccagggtcgaaggccgtcagaaatggacacatgactaggtgtatcaaaacttacctacttta |
35159164 |
T |
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| Q |
712 |
cctatttgg |
720 |
Q |
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| T |
35159163 |
cctatttgg |
35159155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 35159863 - 35159737
Alignment:
| Q |
15 |
cataggttgtcacatgttccgtcataagacacatcaccaccaccggacaaagttgatatgagatttggtgg---tggttcttctcataaaccactaccgc |
111 |
Q |
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||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||| |||| |
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| T |
35159863 |
catagattgtcacatgttccgccataagacacatcaccaccacgggacaaagttgatatgagatttggtggtggtggttcttctgataaaccactgccgc |
35159764 |
T |
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| Q |
112 |
tgaatttgatattgattgcataagtaa |
138 |
Q |
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| T |
35159763 |
tgaatttgatattgattgcataagtaa |
35159737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 608 - 693
Target Start/End: Complemental strand, 42117108 - 42117023
Alignment:
| Q |
608 |
ttcctcgatcatcataccaaaaccttgcagttcgaaagtgaaccagggtcgaaggctgtcagaaatggacacatgactaggtgtat |
693 |
Q |
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|||||||| |||||| ||||| ||||| | | ||||||||||||||| ||||||| ||||| |||| || ||||||| |||||| |
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| T |
42117108 |
ttcctcgaccatcattccaaagccttggaacttgaaagtgaaccagggatgaaggctatcagagatgggcatatgactaagtgtat |
42117023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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