View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12558_high_11 (Length: 329)
Name: NF12558_high_11
Description: NF12558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12558_high_11 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: scaffold0361 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 11561 - 11879
Alignment:
| Q |
1 |
atcttgattttgcggaaatcgccgtgacttttgtgggtgttaagaatacatgacataaagcattttccataaatagttcatactatttcataaataaaca |
100 |
Q |
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| T |
11561 |
atcttgattttgcggaaatcgccgtgacttttgtgggtgttaagaatacatgacataaagcattttccataaatagttcatactatttcataaataaaca |
11660 |
T |
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| Q |
101 |
atttcataaaatacttgaaacacaagttttaattcaatattacctatcccctttctcttttattaaaactttaataaacctctaatggtgtgctatgtga |
200 |
Q |
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| T |
11661 |
atttcataaaatacttgaaacacaagttttaattcaatattacctatcccctttctcttttattaaaactttaataaacctctaatggtgtgctatgtga |
11760 |
T |
|
| Q |
201 |
ttgtttgaaaagtaaaccatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttctttttaagtcaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11761 |
ttgtttgaaaagtaaaccatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttctttttaagtcaatt |
11860 |
T |
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| Q |
301 |
gtctccttagctgcctttg |
319 |
Q |
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||||||||||||||||||| |
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| T |
11861 |
gtctccttagctgcctttg |
11879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 8 - 311
Target Start/End: Original strand, 4946896 - 4947198
Alignment:
| Q |
8 |
ttttgcggaaatcgccgtgacttttgtgggtgttaagaatacatgacataaagcattttccataaatagttcatactatttcataaataaacaatttcat |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4946896 |
ttttgcggaaatcgccgtgacttttgtgggtgttaagaatacatgacataaagcattttccataaatagttcatattatttcataaataaacaatttcat |
4946995 |
T |
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| Q |
108 |
aaaatacttgaaacacaagttttaattcaatattacctatcccctttctcttttattaaaactttaataaacctctaatggtgtgctatgtgattgtttg |
207 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
4946996 |
aaaatacttgagacacaagttttaattcaatattacctatcccctttctcttttattaaaattttaataaacctctaatgatgtgctatgtgattgtttg |
4947095 |
T |
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| Q |
208 |
aaaagtaaaccatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttctttttaagtcaattgtctcct |
307 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4947096 |
aaaagtaaacaatggaaagaatatatcaactcaccttgcgttgcaaggaagcaagaatatgatccactcgcttaatttc-ttttaagtcaattgtctcct |
4947194 |
T |
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| Q |
308 |
tagc |
311 |
Q |
| |
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|||| |
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| T |
4947195 |
tagc |
4947198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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