View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12558_high_14 (Length: 312)

Name: NF12558_high_14
Description: NF12558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12558_high_14
NF12558_high_14
[»] chr4 (48 HSPs)
chr4 (17-296)||(24684267-24684547)
chr4 (17-131)||(45038395-45038513)
chr4 (17-134)||(41083273-41083394)
chr4 (42-131)||(2469899-2469990)
chr4 (44-132)||(40147210-40147300)
chr4 (17-132)||(12498839-12498958)
chr4 (17-131)||(55617570-55617687)
chr4 (17-131)||(55624874-55624991)
chr4 (17-134)||(2470127-2470248)
chr4 (17-98)||(53863351-53863435)
chr4 (17-134)||(9999509-9999628)
chr4 (16-71)||(50290185-50290240)
chr4 (41-131)||(7246269-7246361)
chr4 (42-134)||(11884612-11884707)
chr4 (16-124)||(12592187-12592298)
chr4 (42-132)||(21322016-21322108)
chr4 (43-144)||(46196365-46196469)
chr4 (30-132)||(53863550-53863657)
chr4 (17-128)||(2787889-2788003)
chr4 (16-134)||(40395096-40395218)
chr4 (44-128)||(40146955-40147041)
chr4 (17-134)||(41083051-41083172)
chr4 (16-134)||(12498616-12498739)
chr4 (249-286)||(18991159-18991196)
chr4 (87-135)||(24684048-24684097)
chr4 (42-125)||(45038252-45038337)
chr4 (61-132)||(45038381-45038454)
chr4 (53-128)||(50290395-50290472)
chr4 (16-73)||(2788172-2788231)
chr4 (44-134)||(12592438-12592530)
chr4 (61-131)||(24369269-24369341)
chr4 (17-134)||(45038186-45038304)
chr4 (21-89)||(24369287-24369357)
chr4 (17-134)||(7245989-7246110)
chr4 (18-128)||(25055884-25056000)
chr4 (17-64)||(40395318-40395367)
chr4 (21-71)||(2469901-2469953)
chr4 (17-71)||(7246303-7246359)
chr4 (61-125)||(9999356-9999421)
chr4 (46-75)||(17231986-17232015)
chr4 (16-74)||(24684051-24684111)
chr4 (61-132)||(41083113-41083186)
chr4 (61-128)||(41083259-41083328)
chr4 (55-132)||(51950740-51950817)
chr4 (17-71)||(53863598-53863654)
chr4 (51-129)||(2788149-2788229)
chr4 (21-85)||(26782340-26782407)
chr4 (87-134)||(26782525-26782573)
[»] chr5 (41 HSPs)
chr5 (17-135)||(25456272-25456393)
chr5 (30-135)||(25456507-25456615)
chr5 (17-133)||(16327096-16327216)
chr5 (16-74)||(25456553-25456612)
chr5 (42-134)||(35461433-35461527)
chr5 (42-132)||(17400793-17400885)
chr5 (17-132)||(35461655-35461774)
chr5 (41-130)||(23662124-23662215)
chr5 (17-131)||(16327318-16327434)
chr5 (42-132)||(40980710-40980802)
chr5 (44-121)||(1649379-1649456)
chr5 (30-134)||(5746091-5746200)
chr5 (17-129)||(23661881-23661995)
chr5 (17-129)||(23796575-23796689)
chr5 (17-144)||(1996128-1996260)
chr5 (30-128)||(35813531-35813632)
chr5 (44-133)||(14604067-14604154)
chr5 (42-135)||(20928062-20928157)
chr5 (17-89)||(28559455-28559529)
chr5 (42-131)||(17400545-17400635)
chr5 (30-135)||(20927841-20927950)
chr5 (17-134)||(28559232-28559353)
chr5 (49-132)||(32361167-32361252)
chr5 (17-71)||(36760817-36760873)
chr5 (30-89)||(10827151-10827211)
chr5 (73-128)||(12712424-12712480)
chr5 (73-128)||(12773688-12773744)
chr5 (62-132)||(28559442-28559514)
chr5 (17-128)||(4943119-4943235)
chr5 (17-71)||(6588091-6588145)
chr5 (17-99)||(14604285-14604370)
chr5 (49-129)||(19550101-19550183)
chr5 (17-144)||(37032918-37033047)
chr5 (30-71)||(1649481-1649522)
chr5 (87-128)||(13170001-13170042)
chr5 (25-71)||(19550354-19550402)
chr5 (17-71)||(35461438-35461494)
chr5 (87-132)||(35813531-35813576)
chr5 (44-133)||(10827353-10827445)
chr5 (15-134)||(12713104-12713227)
chr5 (15-134)||(12774368-12774491)
[»] chr2 (21 HSPs)
chr2 (17-134)||(31630064-31630183)
chr2 (17-135)||(5009392-5009513)
chr2 (17-144)||(25895135-25895267)
chr2 (17-134)||(9500902-9501023)
chr2 (45-134)||(5009155-5009247)
chr2 (17-132)||(36217163-36217279)
chr2 (17-77)||(36217222-36217282)
chr2 (17-129)||(31630294-31630409)
chr2 (61-132)||(31630281-31630352)
chr2 (51-133)||(44556523-44556607)
chr2 (87-133)||(45388497-45388543)
chr2 (49-144)||(1316022-1316119)
chr2 (49-123)||(12612656-12612732)
chr2 (17-74)||(5009157-5009217)
chr2 (61-129)||(12612448-12612518)
chr2 (17-72)||(36694533-36694590)
chr2 (17-129)||(29379912-29380028)
chr2 (47-75)||(4056934-4056962)
chr2 (61-135)||(11791373-11791449)
chr2 (30-75)||(29379985-29380032)
chr2 (62-132)||(44556584-44556656)
[»] chr8 (24 HSPs)
chr8 (17-133)||(27128094-27128214)
chr8 (17-133)||(24827355-24827475)
chr8 (17-132)||(6220402-6220521)
chr8 (17-133)||(41151403-41151523)
chr8 (17-134)||(9399813-9399934)
chr8 (42-134)||(24909650-24909744)
chr8 (30-128)||(24083264-24083365)
chr8 (17-133)||(27052406-27052526)
chr8 (17-129)||(27052613-27052729)
chr8 (17-133)||(27127876-27127992)
chr8 (42-132)||(16913000-16913092)
chr8 (17-129)||(36053066-36053181)
chr8 (17-134)||(6220180-6220301)
chr8 (42-134)||(27855554-27855648)
chr8 (41-128)||(27052471-27052560)
chr8 (17-128)||(41151625-41151741)
chr8 (17-128)||(9400046-9400161)
chr8 (49-135)||(15563841-15563928)
chr8 (79-132)||(27052617-27052672)
chr8 (67-143)||(14549946-14550024)
chr8 (34-89)||(38414638-38414694)
chr8 (16-70)||(9400105-9400161)
chr8 (17-132)||(20209479-20209598)
chr8 (17-132)||(20229187-20229306)
[»] chr7 (26 HSPs)
chr7 (30-131)||(30869632-30869737)
chr7 (17-128)||(11975451-11975565)
chr7 (17-144)||(29710539-29710671)
chr7 (42-133)||(42312757-42312850)
chr7 (32-128)||(4048205-4048305)
chr7 (17-132)||(6222079-6222197)
chr7 (30-129)||(6694533-6694636)
chr7 (17-84)||(3198260-3198329)
chr7 (17-134)||(11975660-11975781)
chr7 (33-70)||(29019255-29019292)
chr7 (17-132)||(27576550-27576669)
chr7 (17-71)||(6694749-6694805)
chr7 (17-71)||(31453061-31453117)
chr7 (62-144)||(6694736-6694820)
chr7 (59-133)||(31453045-31453121)
chr7 (87-133)||(3198467-3198514)
chr7 (21-134)||(29710317-29710434)
chr7 (61-129)||(30869605-30869675)
chr7 (16-70)||(40951862-40951918)
chr7 (17-71)||(41666363-41666419)
chr7 (17-71)||(42312761-42312817)
chr7 (62-122)||(43258461-43258522)
chr7 (61-132)||(6694590-6694662)
chr7 (44-99)||(30662188-30662244)
chr7 (17-132)||(44293991-44294110)
chr7 (51-129)||(46713213-46713292)
[»] chr3 (41 HSPs)
chr3 (42-134)||(28814044-28814138)
chr3 (46-129)||(252048-252133)
chr3 (17-136)||(47069523-47069646)
chr3 (17-134)||(18020041-18020162)
chr3 (17-135)||(25848577-25848700)
chr3 (30-133)||(26724244-26724349)
chr3 (17-127)||(30954964-30955078)
chr3 (17-127)||(30970776-30970890)
chr3 (17-126)||(28813843-28813955)
chr3 (18-132)||(25848518-25848636)
chr3 (44-128)||(36667368-36667454)
chr3 (17-131)||(40209894-40210008)
chr3 (16-129)||(36900092-36900209)
chr3 (17-134)||(47891339-47891460)
chr3 (22-134)||(40286471-40286587)
chr3 (16-89)||(32186691-32186766)
chr3 (49-129)||(3169715-3169797)
chr3 (16-69)||(27657986-27658040)
chr3 (50-134)||(32186459-32186545)
chr3 (16-125)||(43649990-43650103)
chr3 (16-74)||(3169712-3169772)
chr3 (44-135)||(47573691-47573784)
chr3 (53-132)||(50332690-50332771)
chr3 (45-131)||(25848287-25848375)
chr3 (51-129)||(39714614-39714694)
chr3 (16-71)||(39714638-39714694)
chr3 (20-89)||(40286282-40286353)
chr3 (87-134)||(7607777-7607824)
chr3 (44-122)||(36375049-36375128)
chr3 (17-77)||(36667299-36667361)
chr3 (49-134)||(46337499-46337586)
chr3 (44-133)||(49364461-49364552)
chr3 (100-130)||(5442690-5442720)
chr3 (17-76)||(14964887-14964947)
chr3 (61-132)||(40286454-40286525)
chr3 (16-70)||(54343525-54343578)
chr3 (17-71)||(26724289-26724345)
chr3 (42-71)||(47069775-47069804)
chr3 (30-122)||(47891118-47891214)
chr3 (42-70)||(14964854-14964882)
chr3 (30-71)||(45131441-45131484)
[»] chr6 (21 HSPs)
chr6 (30-134)||(21598442-21598550)
chr6 (17-134)||(21598665-21598786)
chr6 (42-130)||(35050712-35050802)
chr6 (17-133)||(13273066-13273183)
chr6 (17-133)||(10356481-10356601)
chr6 (17-133)||(17136842-17136962)
chr6 (31-134)||(35225395-35225502)
chr6 (17-144)||(24059654-24059783)
chr6 (21-134)||(10356258-10356375)
chr6 (30-130)||(35050813-35050917)
chr6 (42-132)||(10356320-10356412)
chr6 (61-131)||(35225458-35225530)
chr6 (44-89)||(9982714-9982759)
chr6 (17-129)||(17342660-17342776)
chr6 (17-71)||(35050745-35050801)
chr6 (61-132)||(364045-364117)
chr6 (16-71)||(35225400-35225457)
chr6 (90-135)||(3853493-3853538)
chr6 (16-133)||(3895704-3895823)
chr6 (19-77)||(17137035-17137095)
chr6 (61-132)||(24059724-24059797)
[»] scaffold0018 (2 HSPs)
scaffold0018 (17-134)||(161401-161522)
scaffold0018 (17-132)||(161624-161743)
[»] scaffold0002 (3 HSPs)
scaffold0002 (30-134)||(12278-12383)
scaffold0002 (20-134)||(12048-12163)
scaffold0002 (18-71)||(12053-12106)
[»] scaffold0578 (2 HSPs)
scaffold0578 (45-134)||(2430-2522)
scaffold0578 (17-74)||(2460-2520)
[»] scaffold0157 (2 HSPs)
scaffold0157 (17-132)||(21519-21638)
scaffold0157 (16-134)||(21738-21861)
[»] chr1 (22 HSPs)
chr1 (17-133)||(40892519-40892638)
chr1 (30-133)||(26879633-26879740)
chr1 (21-134)||(33650395-33650513)
chr1 (17-98)||(52913173-52913258)
chr1 (16-128)||(7489902-7490018)
chr1 (61-128)||(1173075-1173142)
chr1 (21-89)||(18608622-18608692)
chr1 (44-132)||(7489958-7490048)
chr1 (20-144)||(50727593-50727722)
chr1 (61-132)||(18608637-18608710)
chr1 (17-71)||(26879680-26879736)
chr1 (17-133)||(33650620-33650740)
chr1 (17-82)||(2633542-2633609)
chr1 (45-89)||(18608572-18608616)
chr1 (17-77)||(2633375-2633437)
chr1 (17-70)||(1173075-1173129)
chr1 (17-71)||(6314296-6314350)
chr1 (18-75)||(18204992-18205049)
chr1 (16-70)||(52913034-52913090)
chr1 (16-89)||(2633189-2633264)
chr1 (30-71)||(34173320-34173363)
chr1 (17-134)||(52913028-52913151)
[»] scaffold0128 (1 HSPs)
scaffold0128 (61-130)||(2597-2667)
[»] scaffold0279 (1 HSPs)
scaffold0279 (17-132)||(1154-1273)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 24684267 - 24684547
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaaccaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaataacttaaaa-accaatctattataaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  24684267 ttatgtgtgactgaaataacttaaaaccaatctgttacaaacctcaaacttaaagaacttacgtgtaatcaaataacttaaaagaccaatctattataaa 24684366  T
Q  116 cctcaaacttaaaggacccaagtgtaattatttaaccttaaactaatgacaaacatgttgacatgaaaaccatacgacaaattacataacattttaatat 215  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24684367 cctcaaacttaaaggacccaagtgtaattatttagccttaaactaatgacaaacatgttgacatgaaaaccatacgacaaattacataacattttaatat 24684466  T
Q  216 gagacaacaatgatgaaaaacatgcagagcatttgtaccatcttcaatcattttaatggtagagagagaatccctctatac 296  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24684467 gagacaacaatgatgaaaaacatgcagagcatttctaccatcttcaatcattttaatggtagagagagaatccctctatac 24684547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 45038395 - 45038513
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaa-aaccaatctattat 112  Q
    |||||||||||  ||||||||||||  |||||||||||||||||||||||||||||| |||||  |||||   ||||||||||||  ||||||||||||     
T  45038395 ttatgtgtgaccaaaataacttaaaggaccaatctgttacaaacctcaaacttaaaggacttatttgtgacaaaaataacttaaatgaccaatctattac 45038494  T
Q  113 aaacctcaaacttaaagga 131  Q
    |||||||||||||||||||    
T  45038495 aaacctcaaacttaaagga 45038513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 41083273 - 41083394
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaa--ccaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattat 112  Q
    ||||||||||| ||||||||||||||  |||||||||||| |||||||||||||||  || ||  ||||| |||| |||||||||  |||||||| |||     
T  41083273 ttatgtgtgaccgaaataacttaaaagaccaatctgttacgaacctcaaacttaaatgacatatatgtgaccaaaataacttaaaggaccaatctgttac 41083372  T
Q  113 aaacctcaaacttaaaggaccc 134  Q
    ||||||||||||||||||||||    
T  41083373 aaacctcaaacttaaaggaccc 41083394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 2469990 - 2469899
Alignment:
Q  42 accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaa-aaccaatctattataaacctcaaacttaaagga 131  Q
    |||||| | ||||||| ||||||||||||| ||||| |||||| |||| ||||||||| ||||||||||||| |||||||||||||||||||    
T  2469990 accaatatattacaaagctcaaacttaaaggacttaggtgtgaccaaaataacttaaagaaccaatctattacaaacctcaaacttaaagga 2469899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 44 - 132
Target Start/End: Original strand, 40147210 - 40147300
Alignment:
Q  44 caatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaata-acttaaaa-accaatctattataaacctcaaacttaaaggac 132  Q
    |||| ||||||||||||||||||||||||||||| |||||| ||||   |||||||  |||||| ||||||||||||||||||||||||||    
T  40147210 caatttgttacaaacctcaaacttaaagaacttatgtgtgaccaaaacgacttaaatgaccaatttattataaacctcaaacttaaaggac 40147300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 12498839 - 12498958
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaa-aaccaatctattat 112  Q
    ||||||||||| ||||||| |||||  |  | ||||||||||| ||||||||||||| ||||| |||||| | ||||||||||||  | ||||||||||     
T  12498839 ttatgtgtgaccgaaataatttaaaggattagtctgttacaaatctcaaacttaaaggacttatgtgtgattaaaataacttaaatgatcaatctattac 12498938  T
Q  113 aaacctcaaacttaaaggac 132  Q
    ||||||||||||||||||||    
T  12498939 aaacctcaaacttaaaggac 12498958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 55617570 - 55617687
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattat 112  Q
    |||||||||||| ||||||||||||  || ||| |||| ||||||||||||||||||  ||||||||| | | |||||||||||| ||| |||||||||     
T  55617570 ttatgtgtgactaaaataacttaaaagacaaatatgttgcaaacctcaaacttaaag-gcttacgtgttaccaaaataacttaaagaactaatctattac 55617668  T
Q  113 aaacctcaaacttaaagga 131  Q
    |||||||||| ||||||||    
T  55617669 aaacctcaaatttaaagga 55617687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 55624874 - 55624991
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattat 112  Q
    |||||||||||| ||||||||||||  || ||| |||| ||||||||||||||||||  ||||||||| | | |||||||||||| ||| |||||||||     
T  55624874 ttatgtgtgactaaaataacttaaaagacaaatatgttgcaaacctcaaacttaaag-gcttacgtgttaccaaaataacttaaagaactaatctattac 55624972  T
Q  113 aaacctcaaacttaaagga 131  Q
    |||||||||| ||||||||    
T  55624973 aaacctcaaatttaaagga 55624991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 2470127 - 2470248
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattat 112  Q
    |||||||||||  ||||||||||||  |||||| | |||||||||||||| |||||| |||||  ||||| |||| |||||||||  ||||||||||||     
T  2470127 ttatgtgtgaccaaaataacttaaaggaccaatatattacaaacctcaaatttaaaggacttatatgtgaccaaaataacttaaaggaccaatctattac 2470226  T
Q  113 aaacctcaaacttaaaggaccc 134  Q
    |||||| ||||| |||||||||    
T  2470227 aaaccttaaactgaaaggaccc 2470248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 53863435 - 53863351
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa 98  Q
    |||||||||||| ||||||||||||  |||||||||||||||| ||| ||||||||  ||||| |||||||| ||||||||||||    
T  53863435 ttatgtgtgactaaaataacttaaaggaccaatctgttacaaatctcgaacttaaatgacttatgtgtgatcaaaataacttaaa 53863351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 9999509 - 9999628
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattat 112  Q
    |||| ||||||  ||||||||||||  ||||||||||||||||||||||||||||  |||| | |||||| | ||||||||||||  ||||||||||||     
T  9999509 ttatatgtgacaaaaataacttaaatgaccaatctgttacaaacctcaaacttaa--aactaatgtgtgaccaaaataacttaaatgaccaatctattac 9999606  T
Q  113 aaacctcaaacttaaaggaccc 134  Q
    |||| || ||||||||| ||||    
T  9999607 aaacttctaacttaaagaaccc 9999628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 50290240 - 50290185
Alignment:
Q  16 tttatgtgtgactgaaataacttaaaaccaatctgttacaaacctcaaacttaaag 71  Q
    ||||||||||||  |||||||||||||||||| ||| |||||||||||||||||||    
T  50290240 tttatgtgtgaccaaaataacttaaaaccaatttgtaacaaacctcaaacttaaag 50290185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 41 - 131
Target Start/End: Original strand, 7246269 - 7246361
Alignment:
Q  41 aaccaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaa-accaatctattataaacctcaaacttaaagga 131  Q
    ||||||||| || |||| ||||||||||||| ||||| || ||| | ||||||||||||| |||||| | ||| |||||||||||||||||||    
T  7246269 aaccaatctattccaaatctcaaacttaaaggacttatgtatgaccaaaataacttaaaagaccaatatgttacaaacctcaaacttaaagga 7246361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 11884707 - 11884612
Alignment:
Q  42 accaatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaaa--accaatctattataaacctcaaacttaaaggaccc 134  Q
    |||||||||||||||||||||||||||||| ||||| ||||||   |||||||||||||  |  ||| | ||| |||||||||| |||||||||||    
T  11884707 accaatctgttacaaacctcaaacttaaaggacttatgtgtgacaaaaataacttaaaaggattaatttgttacaaacctcaaatttaaaggaccc 11884612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 12592298 - 12592187
Alignment:
Q  16 tttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaaaccaatctattat 112  Q
    ||||||||||||  ||||||||||||  | ||||||||||||||  ||||||  ||| |||||| || | | |||| |||||||||||||||||| |||     
T  12592298 tttatgtgtgaccaaaataacttaaatgatcaatctgttacaaatttcaaacacaaataacttatgtttaaccaaaataacttaaaaaccaatctgttac 12592199  T
Q  113 aaacctcaaact 124  Q
    ||||||||||||    
T  12592198 aaacctcaaact 12592187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 21322016 - 21322108
Alignment:
Q  42 accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaa-accaatctattataaacctcaaacttaaaggac 132  Q
    |||||||| ||||||||||||||||||||| |||||  ||||| | ||||||||||||| |  ||| | ||| ||||||||||||||||||||    
T  21322016 accaatcttttacaaacctcaaacttaaaggacttatatgtgaccaaaataacttaaaagaaaaatgtgttacaaacctcaaacttaaaggac 21322108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 46196365 - 46196469
Alignment:
Q  43 ccaatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataactta-aaaaccaatctattataaacctcaaacttaaaggacccaa-gtg 139  Q
    ||||||||||||||||||||||||||||| ||||| || |||   |||||||||| |  ||  |||| |||||||| ||||||||||||||||||| |||    
T  46196365 ccaatctgttacaaacctcaaacttaaaggacttatgtatgacaaaaataacttacatgacttatctgttataaacgtcaaacttaaaggacccaatgtg 46196464  T
Q  140 taatt 144  Q
    |||||    
T  46196465 taatt 46196469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 53863550 - 53863657
Alignment:
Q  30 aaataacttaaa--accaatctgttacaaacctcaaactt-aaagaacttacgtgtga-tcaaataacttaaa-aaccaatctattataaacctcaaact 124  Q
    ||||||||||||  |||||| |||||||| |||||||||| |||| ||||| |||||| | ||||||||||||  |||||||||||| |||| | |||||    
T  53863550 aaataacttaaaggaccaatttgttacaaccctcaaacttaaaaggacttatgtgtgactaaaataacttaaacgaccaatctattacaaacttgaaact 53863649  T
Q  125 taaaggac 132  Q
    ||||||||    
T  53863650 taaaggac 53863657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 2788003 - 2787889
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaaccaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataact--taaaaaccaatctattata 113  Q
    |||||||||||  |||||||||||||| ||| |||||||||||| |||||||||  ||||| |||  | | ||||||||  |||| ||| |||||||| |    
T  2788003 ttatgtgtgaccaaaataacttaaaacaaatatgttacaaaccttaaacttaaatgacttatgtgcaaccaaaataacttataaagaccgatctattaca 2787904  T
Q  114 aacctcaaacttaaa 128  Q
    ||| |||||||||||    
T  2787903 aacatcaaacttaaa 2787889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 40395218 - 40395096
Alignment:
Q  16 tttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaa-aaccaatctatta 111  Q
    ||||||||||||  ||||||||||||  || ||| ||||||||||||||||||||||| |||||  |||||   ||||||| ||||  |||||||| | |    
T  40395218 tttatgtgtgaccaaaataacttaaagaactaatatgttacaaacctcaaacttaaaggacttatatgtgacaaaaataacctaaaggaccaatctgtaa 40395119  T
Q  112 taaacctcaaacttaaaggaccc 134  Q
     ||| ||||||||||||||||||    
T  40395118 caaatctcaaacttaaaggaccc 40395096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 40147041 - 40146955
Alignment:
Q  44 caatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaa 128  Q
    |||||| ||||||||||||||||| ||| ||||| |||||| | ||||||||||||  || ||||||| | ||||||||||||||||    
T  40147041 caatctattacaaacctcaaacttcaaggacttatgtgtgaccaaaataacttaaatgacaaatctatcacaaacctcaaacttaaa 40146955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 41083172 - 41083051
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaa-aaccaatctattat 112  Q
    ||||||||||   ||||||||||||  |||||| |||||||||| |||||||||||| |||||  |||||   ||||||||||||  | |||| | |||     
T  41083172 ttatgtgtgatcaaaataacttaaaggaccaatatgttacaaacttcaaacttaaaggacttatatgtgacaaaaataacttaaatgatcaatatgttac 41083073  T
Q  113 aaacctcaaacttaaaggaccc 134  Q
    ||||||||||||||||||||||    
T  41083072 aaacctcaaacttaaaggaccc 41083051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 12498739 - 12498616
Alignment:
Q  16 tttatgtgtgactgaaataacttaaaac--caatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa--accaatctatt 110  Q
    ||||||||||||  |||||||||||||   |||| | || ||||||| |||||||||  ||||| ||||||  ||| ||||||||||  |||||||||||    
T  12498739 tttatgtgtgaccaaaataacttaaaagatcaatatattgcaaaccttaaacttaaaagacttatgtgtgacaaaaataacttaaaaggaccaatctatt 12498640  T
Q  111 ataaacctcaaacttaaaggaccc 134  Q
    | |||||||||| |||| ||||||    
T  12498639 acaaacctcaaatttaatggaccc 12498616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 18991159 - 18991196
Alignment:
Q  249 tgtaccatcttcaatcattttaatggtagagagagaat 286  Q
    |||||||||||||||||||||||||| |||||||||||    
T  18991159 tgtaccatcttcaatcattttaatggcagagagagaat 18991196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 24684097 - 24684048
Alignment:
Q  87 aaataacttaaaa-accaatctattataaacctcaaacttaaaggaccca 135  Q
    ||||||||||||| | |||||||||||||||||||||||||||| |||||    
T  24684097 aaataacttaaaacatcaatctattataaacctcaaacttaaagaaccca 24684048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 45038337 - 45038252
Alignment:
Q  42 accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaa-aaaccaatctattataaacctcaaactt 125  Q
    |||||||||||| ||| ||||||||||||| ||||| |||||| | |||||||||||   |||||||| |||||||||| ||||||    
T  45038337 accaatctgttataaatctcaaacttaaaggacttatgtgtgaccgaaataacttaacggaccaatctgttataaaccttaaactt 45038252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 45038381 - 45038454
Alignment:
Q  61 caaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaaggac 132  Q
    ||||||||||| ||||| |||||| |||| |||||||||  |||||||| ||| ||||||||||||||||||||    
T  45038381 caaacttaaaggacttatgtgtgaccaaaataacttaaaggaccaatctgttacaaacctcaaacttaaaggac 45038454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 50290395 - 50290472
Alignment:
Q  53 acaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaa 128  Q
    |||||||||||||||||| |||||| |||||| | ||||||||||||  | |||| ||||| ||||||||||||||||    
T  50290395 acaaacctcaaacttaaaaaacttatgtgtgaccaaaataacttaaatgatcaatttattacaaacctcaaacttaaa 50290472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 2788172 - 2788231
Alignment:
Q  16 tttatgtgtgactgaaataacttaaaac--caatctgttacaaacctcaaacttaaagaa 73  Q
    ||||||||||||  |||||||||||||   |||| |||||||||||||||||||||||||    
T  2788172 tttatgtgtgaccaaaataacttaaaatatcaatttgttacaaacctcaaacttaaagaa 2788231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 134
Target Start/End: Original strand, 12592438 - 12592530
Alignment:
Q  44 caatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaaaac-caatctattataaacctcaaacttaaaggaccc 134  Q
    |||||| |||||||| |||||||||||| ||| |  ||||| | |||||| |||||||  |||| |||||||||||||||||||||| |||||    
T  12592438 caatctattacaaacttcaaacttaaaggactaatatgtgactaaaataaattaaaaaatcaatttattataaacctcaaacttaaacgaccc 12592530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 131
Target Start/End: Original strand, 24369269 - 24369341
Alignment:
Q  61 caaacttaaagaacttacgtgtga-tcaaataacttaaaa-accaatctattataaacctcaaacttaaagga 131  Q
    ||||||||||| ||||| |||||| | ||||||||||||  || ||||||||| |||||||||||||||||||    
T  24369269 caaacttaaaggacttaggtgtgactaaaataacttaaaggacaaatctattacaaacctcaaacttaaagga 24369341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 45038304 - 45038186
Alignment:
Q  17 ttatgtgtgactgaaataacttaa--aaccaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaa-accaatctattat 112  Q
    ||||||||||| ||||||||||||   |||||||||||| |||||| ||||||   |||||||   |||| | ||||||||||||| | |||| |||||     
T  45038304 ttatgtgtgaccgaaataacttaacggaccaatctgttataaaccttaaactt---gaacttatacgtgaccaaaataacttaaaagatcaatatattac 45038208  T
Q  113 aaacctcaaacttaaaggaccc 134  Q
    ||||||||||||||||| ||||    
T  45038207 aaacctcaaacttaaagaaccc 45038186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 24369287 - 24369357
Alignment:
Q  21 gtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa 89  Q
    |||||||| ||||||||||||  || ||||| ||||||||||||||||||||| | ||| |||||| ||||    
T  24369287 gtgtgactaaaataacttaaaggacaaatctattacaaacctcaaacttaaaggaattaggtgtgaccaaa 24369357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 7246110 - 7245989
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattat 112  Q
    |||||||| ||  ||||||||||||  |||||| |||||||||  |||||||||||| ||||| || ||| | ||||||||||||  | ||| || |||     
T  7246110 ttatgtgtaaccaaaataacttaaacgaccaatttgttacaaatatcaaacttaaaggacttatgtctgaccaaaataacttaaaggatcaacctgttac 7246011  T
Q  113 aaacctcaaacttaaaggaccc 134  Q
    |||| |||||||||||||||||    
T  7246010 aaacgtcaaacttaaaggaccc 7245989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 25056000 - 25055884
Alignment:
Q  18 tatgtgtgactgaaataacttaaa--accaatctgttacaaa--cctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctatta 111  Q
    ||||||||||  |||||||||||   | ||||||||||||||  |||||||||||||| | ||| |||| | |||| |||||||||  || |||||||||    
T  25056000 tatgtgtgacaaaaataacttaatggaacaatctgttacaaaatcctcaaacttaaaggatttatgtgtcaccaaaataacttaaaggacaaatctatta 25055901  T
Q  112 taaacctcaaacttaaa 128  Q
     ||||||||||||||||    
T  25055900 caaacctcaaacttaaa 25055884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 40395318 - 40395367
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaa 64  Q
    ||||||||||| |||||||||||||  || ||||||||||||||||||||    
T  40395318 ttatgtgtgacagaaataacttaaaggactaatctgttacaaacctcaaa 40395367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 2469953 - 2469901
Alignment:
Q  21 gtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaag 71  Q
    |||||||  ||||||||||||  |||||||| |||||||||||||||||||||    
T  2469953 gtgtgaccaaaataacttaaagaaccaatctattacaaacctcaaacttaaag 2469901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 7246303 - 7246359
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaa--ccaatctgttacaaacctcaaacttaaag 71  Q
    |||||| ||||  |||||||||||||  ||||| |||||||||||||||||||||||    
T  7246303 ttatgtatgaccaaaataacttaaaagaccaatatgttacaaacctcaaacttaaag 7246359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 9999421 - 9999356
Alignment:
Q  61 caaacttaaagaacttacgtgtgatcaa-ataacttaaaaaccaatctattataaacctcaaactt 125  Q
    ||||||||||||| ||| |||||| ||| ||||||||||||||||| | ||| |||| ||||||||    
T  9999421 caaacttaaagaatttatgtgtgaccaatataacttaaaaaccaatatgttagaaacatcaaactt 9999356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 75
Target Start/End: Complemental strand, 17232015 - 17231986
Alignment:
Q  46 atctgttacaaacctcaaacttaaagaact 75  Q
    ||||||||||||||||||||||||||||||    
T  17232015 atctgttacaaacctcaaacttaaagaact 17231986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 24684111 - 24684051
Alignment:
Q  16 tttatgtgtgactgaaataacttaaaac--caatctgttacaaacctcaaacttaaagaac 74  Q
    ||||| ||||||  ||||||||||||||  |||||| ||| ||||||||||||||||||||    
T  24684111 tttatatgtgacaaaaataacttaaaacatcaatctattataaacctcaaacttaaagaac 24684051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 41083186 - 41083113
Alignment:
Q  61 caaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaaggac 132  Q
    ||||||||||| ||||| |||||||| ||||||||||||  |||||| | ||| |||| |||||||||||||||    
T  41083186 caaacttaaaggacttatgtgtgatcaaaataacttaaaggaccaatatgttacaaacttcaaacttaaaggac 41083113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 128
Target Start/End: Original strand, 41083259 - 41083328
Alignment:
Q  61 caaacttaaagaacttacgtgtgatc-aaataacttaaaa-accaatctattataaacctcaaacttaaa 128  Q
    ||||||||||| ||||| |||||| | ||||||||||||| |||||||| |||  |||||||||||||||    
T  41083259 caaacttaaaggacttatgtgtgaccgaaataacttaaaagaccaatctgttacgaacctcaaacttaaa 41083328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 51950740 - 51950817
Alignment:
Q  55 aaacctcaaacttaaagaacttacgtgtgatcaaataacttaaaaaccaatctattataaacctcaaacttaaaggac 132  Q
    ||||||| ||||||||| ||||| |||| | ||||  | ||||  |||||||||||| |||| |||||||||||||||    
T  51950740 aaacctcgaacttaaaggacttaagtgtaaccaaaataattaaggaccaatctattacaaacttcaaacttaaaggac 51950817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 53863598 - 53863654
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaag 71  Q
    |||||||||||| ||||||||||||  |||||||| |||||||| | ||||||||||    
T  53863598 ttatgtgtgactaaaataacttaaacgaccaatctattacaaacttgaaacttaaag 53863654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 2788149 - 2788229
Alignment:
Q  51 ttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaag 129  Q
    |||||||||| |||||||||| | ||| |||||| |||| |||||||||| | |||| | ||| |||||||||||||||||    
T  2788149 ttacaaaccttaaacttaaaggatttatgtgtgaccaaaataacttaaaatatcaatttgttacaaacctcaaacttaaag 2788229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 26782407 - 26782340
Alignment:
Q  21 gtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaa-gaacttacgtgtgat 85  Q
    |||||||  ||||||||||||  ||||||||||||||||  ||||||||||| ||||||| |||||||    
T  26782407 gtgtgaccaaaataacttaaaggaccaatctgttacaaatatcaaacttaaaggaacttatgtgtgat 26782340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 26782525 - 26782573
Alignment:
Q  87 aaataacttaaaaac-caatctattataaacctcaaacttaaaggaccc 134  Q
    ||||||||||||||  |||| ||||| ||||||||||||||||||||||    
T  26782525 aaataacttaaaaaatcaatatattacaaacctcaaacttaaaggaccc 26782573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 25456393 - 25456272
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaaaccaatctattata 113  Q
    |||| ||||||  ||||||||||||  |||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||  |||||| | ||| |    
T  25456393 ttatttgtgaccaaaataacttaaaggaccaatctgttacaaacctcaaacttaaaggacttatgtgtgatcaaaataacttaaggaccaatatgttaca 25456294  T
Q  114 aacctcaaacttaaaggaccca 135  Q
    ||||| ||||||||||||||||    
T  25456293 aacctaaaacttaaaggaccca 25456272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 25456507 - 25456615
Alignment:
Q  30 aaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaaaaccaatctattataaacctcaaactta 126  Q
    ||||||||||||  |||||||| ||||||||||||||||||||| | ||| |||||| | |||||||||||| |||||||| ||| ||||||||||||||    
T  25456507 aaataacttaaaggaccaatctattacaaacctcaaacttaaagtatttatgtgtgactaaaataacttaaagaccaatctgttacaaacctcaaactta 25456606  T
Q  127 aaggaccca 135  Q
    ||| |||||    
T  25456607 aagaaccca 25456615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 16327216 - 16327096
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaa-aaccaatctattat 112  Q
    |||||||| ||  ||||||||||||  |||||||||||||||||||||||||||||| ||||| ||| || | ||||||||||||  | ||||||||||     
T  16327216 ttatgtgttaccaaaataacttaaacgaccaatctgttacaaacctcaaacttaaaggacttatgtgcgactaaaataacttaaacgatcaatctattac 16327117  T
Q  113 aaacctcaaacttaaaggacc 133  Q
    ||||||| |||||||||||||    
T  16327116 aaacctctaacttaaaggacc 16327096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 25456553 - 25456612
Alignment:
Q  16 tttatgtgtgactgaaataacttaaa-accaatctgttacaaacctcaaacttaaagaac 74  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  25456553 tttatgtgtgactaaaataacttaaagaccaatctgttacaaacctcaaacttaaagaac 25456612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 35461527 - 35461433
Alignment:
Q  42 accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaaggaccc 134  Q
    ||||||||||||||||| ||||||||| || ||||| |||||| | ||||||||||||  |||||| ||||| ||||||||||||||||||||||    
T  35461527 accaatctgttacaaacttcaaacttacaggacttatgtgtgaccaaaataacttaaaggaccaatatattacaaacctcaaacttaaaggaccc 35461433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 132
Target Start/End: Original strand, 17400793 - 17400885
Alignment:
Q  42 accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaaggac 132  Q
    |||||||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||  |||||| | ||| ||| ||||||||||||||||    
T  17400793 accaatctgttacaaaactcaaacttaaaggacttatgtgtgatcaaaataacttaaatgaccaatatgttacaaatctcaaacttaaaggac 17400885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 35461655 - 35461774
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattat 112  Q
    |||| ||||||  ||||||||||||  | |||||||||||||| |||||| |||||  ||||| |||||| |||| |||||||||  ||||||||||||     
T  35461655 ttatttgtgacaaaaataacttaaatgatcaatctgttacaaatctcaaaattaaatgacttatgtgtgaccaaaataacttaaaggaccaatctattac 35461754  T
Q  113 aaacctcaaacttaaaggac 132  Q
    ||||||||||||||||||||    
T  35461755 aaacctcaaacttaaaggac 35461774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 130
Target Start/End: Original strand, 23662124 - 23662215
Alignment:
Q  41 aaccaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaagg 130  Q
    ||||||| ||||||||| ||||||||||||||||||| |||| | | ||||||||||||  |||||| ||||| ||||||||||||||||||    
T  23662124 aaccaatttgttacaaatctcaaacttaaagaacttatgtgtaaccaaaataacttaaaggaccaatttattacaaacctcaaacttaaagg 23662215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 16327318 - 16327434
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaataacttaaa-aaccaatctattata 113  Q
    |||| ||||||  ||||||||||||  | |||||||||||||||||||||||||||| ||||| ||||  | ||||||||||||  |  ||||||||| |    
T  16327318 ttatttgtgaccaaaataacttaaaggatcaatctgttacaaacctcaaacttaaaggacttatgtgt-ctaaaataacttaaatgattaatctattaca 16327416  T
Q  114 aacctcaaacttaaagga 131  Q
    ||||||||||||||||||    
T  16327417 aacctcaaacttaaagga 16327434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 40980802 - 40980710
Alignment:
Q  42 accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaaggac 132  Q
    |||||| | |||||||  |||||||||||| ||||| ||||||||||| |||||||||  | |||||||||| ||||||||||||||||||||    
T  40980802 accaatttattacaaatttcaaacttaaagtacttatgtgtgatcaaaataacttaaatgatcaatctattacaaacctcaaacttaaaggac 40980710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 1649379 - 1649456
Alignment:
Q  44 caatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaaaccaatctattataaacctcaa 121  Q
    |||||||||||||||||||||||||||| ||||| || ||| | ||||| ||||||||||||| | |||||||||||||    
T  1649379 caatctgttacaaacctcaaacttaaag-acttatgtctgaccaaaatagcttaaaaaccaatatgttataaacctcaa 1649456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 5746200 - 5746091
Alignment:
Q  30 aaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaa-tctattataaacctcaaact 124  Q
    ||||||||||||  |||||||||||| |||||||||| |||||||||||| |||||| | ||||||||||||  ||||| | | |||||||| ||||| |    
T  5746200 aaataacttaaatgaccaatctgttataaacctcaaatttaaagaacttatgtgtgaccaaaataacttaaatgaccaatttttttataaacttcaaaat 5746101  T
Q  125 taaaggaccc 134  Q
    ||||||||||    
T  5746100 taaaggaccc 5746091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 23661995 - 23661881
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaaccaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaa-accaatctattataa 114  Q
    |||||||||||  ||||||||||||| |||||||| |||||  |||||||||||| ||||| |||| | | ||||||||||||| | |||||| ||| ||    
T  23661995 ttatgtgtgaccaaaataacttaaaatcaatctgtcacaaatatcaaacttaaaggacttatgtgtaaccaaaataacttaaaagatcaatctgttacaa 23661896  T
Q  115 acctcaaacttaaag 129  Q
    || ||||| ||||||    
T  23661895 acgtcaaatttaaag 23661881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 23796575 - 23796689
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaaccaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaa-accaatctattataa 114  Q
    |||||||||||  ||||||||||||| |||||||| |||||  |||||||||||| ||||| |||| | | ||||||||||||| | |||||| ||| ||    
T  23796575 ttatgtgtgaccaaaataacttaaaatcaatctgtcacaaatatcaaacttaaaggacttatgtgtaaccaaaataacttaaaagatcaatctgttacaa 23796674  T
Q  115 acctcaaacttaaag 129  Q
    || ||||| ||||||    
T  23796675 acgtcaaatttaaag 23796689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 1996260 - 1996128
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattat 112  Q
    |||||||||||  ||||||||||||  || ||||| ||||||||| ||||||||||| | |||  ||||| |||| |||||||||| | |||||| |||     
T  1996260 ttatgtgtgaccaaaataacttaaaggactaatctattacaaaccccaaacttaaaggatttatatgtgaccaaaataacttaaaatatcaatctgttac 1996161  T
Q  113 aaacctcaaacttaaaggaccca-agtgtaatt 144  Q
    ||| |||||||||||||||| || |||||||||    
T  1996160 aaatctcaaacttaaaggacacatagtgtaatt 1996128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 35813531 - 35813632
Alignment:
Q  30 aaataacttaaaaccaa-tctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaactta 126  Q
    ||||||||||||| ||| |||||||||||||||| |||||||| ||||| |||| | | |||||||||||| ||| ||||| ||| |||||| |||||||    
T  35813531 aaataacttaaaaacaaatctgttacaaacctcacacttaaaggacttatgtgtaaccaaaataacttaaataactaatctgttacaaaccttaaactta 35813630  T
Q  127 aa 128  Q
    ||    
T  35813631 aa 35813632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 14604154 - 14604067
Alignment:
Q  44 caatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaaaccaatctattataaacctcaaacttaaaggacc 133  Q
    |||||||||||||||||||||||||||| ||||| |||||| | |||||||||    | |||||||||| |||||||||| ||||| ||||    
T  14604154 caatctgttacaaacctcaaacttaaaggacttatgtgtgaccaaaataactt---gatcaatctattacaaacctcaaatttaaacgacc 14604067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 135
Target Start/End: Original strand, 20928062 - 20928157
Alignment:
Q  42 accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaaggaccca 135  Q
    |||||| ||||| ||| ||||||||||||| ||||| |||||| | ||||||||||||  || ||||| |||||||||||||| ||||| ||||||    
T  20928062 accaatttgttagaaaactcaaacttaaaggacttatgtgtgaccaaaataacttaaaggacaaatctgttataaacctcaaagttaaaagaccca 20928157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 28559455 - 28559529
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa 89  Q
    |||||||||||| |||||| |||||  |||||||||||| ||||||||||||||||| ||||  |||||| ||||    
T  28559455 ttatgtgtgactaaaataatttaaaggaccaatctgttataaacctcaaacttaaaggacttgtgtgtgaccaaa 28559529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 17400635 - 17400545
Alignment:
Q  42 accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaataacttaaa-aaccaatctattataaacctcaaacttaaagga 131  Q
    |||||| |||||||||  |||||||||||  ||||| ||||||  |||||||||||| ||||||| ||||| | |||||||||||| ||||    
T  17400635 accaatttgttacaaatttcaaacttaaaagacttatgtgtgacaaaataacttaaagaaccaatttattacacacctcaaacttagagga 17400545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 135
Target Start/End: Complemental strand, 20927950 - 20927841
Alignment:
Q  30 aaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaaa-accaatctattataaacctcaaactt 125  Q
    ||||||||||||  |||||| | |||||||||||||| |||||| ||||| |||| | | ||||||||||||  | |||||||||| ||| |||||||||    
T  20927950 aaataacttaaatgaccaatttattacaaacctcaaatttaaaggacttatgtgtaactaaaataacttaaatgatcaatctattacaaatctcaaactt 20927851  T
Q  126 aaaggaccca 135  Q
    ||| ||||||    
T  20927850 aaaagaccca 20927841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 28559353 - 28559232
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaa-aaccaatctattat 112  Q
    |||||||||||  ||||||||||||  ||||||||||||||||||||||||| ||   ||||| | || |   ||||||||||||  |||||||| |||     
T  28559353 ttatgtgtgaccaaaataacttaaaggaccaatctgttacaaacctcaaactgaattgacttatgcgtaacaaaaataacttaaaggaccaatctgttac 28559254  T
Q  113 aaacctcaaacttaaaggaccc 134  Q
    |||| |||||||||||||||||    
T  28559253 aaacgtcaaacttaaaggaccc 28559232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 32361252 - 32361167
Alignment:
Q  49 tgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaaggac 132  Q
    |||||||||| ||||||||||| |||||| |||||| | ||||||||||||  | |||||||||| |||| ||||| |||||||||    
T  32361252 tgttacaaacttcaaacttaaataacttatgtgtgaccaaaataacttaaatgatcaatctattacaaacttcaaatttaaaggac 32361167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 36760817 - 36760873
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaag 71  Q
    ||||||||||| |||||||||||||  | | ||||||||||||||||||||||||||    
T  36760817 ttatgtgtgaccgaaataacttaaattatctatctgttacaaacctcaaacttaaag 36760873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 10827211 - 10827151
Alignment:
Q  30 aaataacttaaa-accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa 89  Q
    |||||||||||| |||||||||||||||| ||||||||||||  ||||| |||||| ||||    
T  10827211 aaataacttaaagaccaatctgttacaaaactcaaacttaaaagacttatgtgtgaccaaa 10827151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 12712480 - 12712424
Alignment:
Q  73 acttacgtgtgatcaaa-taacttaaaaaccaatctattataaacctcaaacttaaa 128  Q
    ||||| ||||||||||| ||||||||||| |||||||||| |||| |||||||||||    
T  12712480 acttatgtgtgatcaaaataacttaaaaatcaatctattacaaacatcaaacttaaa 12712424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 128
Target Start/End: Complemental strand, 12773744 - 12773688
Alignment:
Q  73 acttacgtgtgatcaaa-taacttaaaaaccaatctattataaacctcaaacttaaa 128  Q
    ||||| ||||||||||| ||||||||||| |||||||||| |||| |||||||||||    
T  12773744 acttatgtgtgatcaaaataacttaaaaatcaatctattacaaacatcaaacttaaa 12773688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 28559442 - 28559514
Alignment:
Q  62 aaacttaaagaacttacgtgtga-tcaaataacttaaaa-accaatctattataaacctcaaacttaaaggac 132  Q
    |||||||||| ||||| |||||| | |||||| |||||  |||||||| ||||||||||||||||||||||||    
T  28559442 aaacttaaaggacttatgtgtgactaaaataatttaaaggaccaatctgttataaacctcaaacttaaaggac 28559514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 4943119 - 4943235
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaac---caatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctatta 111  Q
    |||||||||||  |||||||||||||    |||||||||| |||  |||||||||||| ||||| |||||||| |||||| |||||  |||||| | |||    
T  4943119 ttatgtgtgaccaaaataacttaaaaggatcaatctgttataaatttcaaacttaaaggacttatgtgtgatcaaaataatttaaagtaccaatatgtta 4943218  T
Q  112 taaacctcaaacttaaa 128  Q
     ||| ||||||||||||    
T  4943219 caaatctcaaacttaaa 4943235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 6588091 - 6588145
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaaccaatctgttacaaacctcaaacttaaag 71  Q
    ||||||| |||  ||||||||||||| |||| |||||||||||||||| ||||||    
T  6588091 ttatgtgcgaccaaaataacttaaaatcaatatgttacaaacctcaaatttaaag 6588145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 14604285 - 14604370
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaa 99  Q
    |||||||||||  ||||||||||||  |||||||| |||||||| | ||| |||||||| ||| |||||| | |||||||||||||    
T  14604285 ttatgtgtgaccaaaataacttaaaggaccaatctattacaaactttaaatttaaagaatttaggtgtgaccaaaataacttaaaa 14604370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 19550183 - 19550101
Alignment:
Q  49 tgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaa-aaccaatctattataaacctcaaacttaaag 129  Q
    ||||| ||| ||||||||||||  ||||| |||| | |||| ||||||||| || |||||||||| |||||||||||||||||    
T  19550183 tgttaaaaatctcaaacttaaaagacttatgtgtcaccaaaataacttaaagaatcaatctattacaaacctcaaacttaaag 19550101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 37032918 - 37033047
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaa-ccaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaaaccaatctattataa 114  Q
    |||| ||||||  ||||||||||||| ||||| ||||| |||  |||||||| ||| ||||| |||||| |||| |||||||||| | ||||| | ||||    
T  37032918 ttatttgtgacccaaataacttaaaaaccaatatgttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaa-ctaatctgtcataa 37033016  T
Q  115 acctcaaacttaaagga-cccaagtgtaatt 144  Q
    | |||||||||||| || ||||||| |||||    
T  37033017 atctcaaacttaaaagatcccaagtataatt 37033047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 1649481 - 1649522
Alignment:
Q  30 aaataacttaaaaccaatctgttacaaacctcaaacttaaag 71  Q
    ||||||||||||| |||| |||||||||||| ||||||||||    
T  1649481 aaataacttaaaatcaatatgttacaaaccttaaacttaaag 1649522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 13170042 - 13170001
Alignment:
Q  87 aaataacttaaaaaccaatctattataaacctcaaacttaaa 128  Q
    |||||||||||| |||||| ||||| ||||||||||||||||    
T  13170042 aaataacttaaagaccaatttattacaaacctcaaacttaaa 13170001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 19550354 - 19550402
Alignment:
Q  25 gactgaaataacttaaa--accaatctgttacaaacctcaaacttaaag 71  Q
    |||| ||||||||||||  | ||||||||||||||||||||||||||||    
T  19550354 gacttaaataacttaaaggaacaatctgttacaaacctcaaacttaaag 19550402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 35461494 - 35461438
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaag 71  Q
    |||||||||||  ||||||||||||  |||||| | |||||||||||||||||||||    
T  35461494 ttatgtgtgaccaaaataacttaaaggaccaatatattacaaacctcaaacttaaag 35461438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 35813531 - 35813576
Alignment:
Q  87 aaataacttaaaaaccaatctattataaacctcaaacttaaaggac 132  Q
    ||||||||||||||| ||||| ||| |||||||| |||||||||||    
T  35813531 aaataacttaaaaacaaatctgttacaaacctcacacttaaaggac 35813576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 10827353 - 10827445
Alignment:
Q  44 caatctgttacaaacctcaaacttaaa-gaacttacgtgtgatcaaat-aacttaaaa-accaatctattataaacctcaaacttaaaggacc 133  Q
    |||||||||||||| |||||||||||| | ||||| | |||| ||||  ||||||||  |||||| ||||| |||||||||||||||| ||||    
T  10827353 caatctgttacaaaactcaaacttaaaaggacttatgagtgaccaaaacaacttaaaggaccaatttattacaaacctcaaacttaaatgacc 10827445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 12713104 - 12713227
Alignment:
Q  15 ctttatgtgtgactgaaataacttaaaac--caatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaa-aaccaatctatt 110  Q
    ||||||| |||||  |||||||||||||   |||| ||||| ||| ||||||||||||| ||||| ||||||   ||||||||||||  || || |||||    
T  12713104 ctttatgcgtgaccaaaataacttaaaagatcaatatgttagaaatctcaaacttaaaggacttatgtgtgacaaaaataacttaaatgactaacctatt 12713203  T
Q  111 ataaacctcaaacttaaaggaccc 134  Q
    ||||| |||||| |||||| ||||    
T  12713204 ataaagctcaaatttaaagaaccc 12713227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 12774368 - 12774491
Alignment:
Q  15 ctttatgtgtgactgaaataacttaaaac--caatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaa-aaccaatctatt 110  Q
    ||||||| |||||  |||||||||||||   |||| ||||| ||| ||||||||||||| ||||| ||||||   ||||||||||||  || || |||||    
T  12774368 ctttatgcgtgaccaaaataacttaaaagatcaatatgttagaaatctcaaacttaaaggacttatgtgtgacaaaaataacttaaatgactaacctatt 12774467  T
Q  111 ataaacctcaaacttaaaggaccc 134  Q
    ||||| |||||| |||||| ||||    
T  12774468 ataaagctcaaatttaaagaaccc 12774491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 31630183 - 31630064
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaaaccaatctattata 113  Q
    |||||||||||  ||||||||||||  | ||||||||||||||||||||||||||||| |||| |||||| |||| ||| ||| |||| ||||||||| |    
T  31630183 ttatgtgtgaccaaaataacttaaaggatcaatctgttacaaacctcaaacttaaaga-cttaggtgtgaccaaaataatttataaacaaatctattaca 31630085  T
Q  114 aacctcaaacttaaaggaccc 134  Q
    |||||||||||||||||||||    
T  31630084 aacctcaaacttaaaggaccc 31630064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 5009392 - 5009513
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaataacttaaaa-accaatctattata 113  Q
    |||||||||||  ||||||||||||  | |||| ||||||||||||||||||||||| ||||| ||||||  ||| ||||||||| |||||| | ||| |    
T  5009392 ttatgtgtgacaaaaataacttaaaggatcaatatgttacaaacctcaaacttaaagtacttatgtgtgacaaaaaaacttaaaagaccaatatgttaca 5009491  T
Q  114 aacctcaaacttaaaggaccca 135  Q
    ||||||||||||||||||||||    
T  5009492 aacctcaaacttaaaggaccca 5009513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 25895135 - 25895267
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaac--caatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattat 112  Q
    |||||||||||| ||||||||||||    ||||||||||||||||| |||||||||| ||||  |||||| | ||||||||||||  |||||||| |||     
T  25895135 ttatgtgtgactaaaataacttaaaggttcaatctgttacaaaccttaaacttaaaggacttttgtgtgaccaaaataacttaaaggaccaatctgttac 25895234  T
Q  113 aaacctcaaacttaaaggac-ccaagtgtaatt 144  Q
    |||||||||||||||||||| || |||||||||    
T  25895235 aaacctcaaacttaaaggactcctagtgtaatt 25895267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 9501023 - 9500902
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattat 112  Q
    |||||||||||| ||||||||||||  | | |||||||||||||||||||||||| | ||||| |||||| | ||||||||||||  |||||||| |||     
T  9501023 ttatgtgtgactaaaataacttaaagaagcgatctgttacaaacctcaaacttaagggacttaagtgtgaccaaaataacttaaaggaccaatctgttac 9500924  T
Q  113 aaacctcaaacttaaaggaccc 134  Q
    | |||| |||||||||||||||    
T  9500923 agacctaaaacttaaaggaccc 9500902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 5009247 - 5009155
Alignment:
Q  45 aatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa--accaatctattataaacctcaaacttaaaggaccc 134  Q
    ||||||||||||||| ||||||||||  ||||| |||||| |||| ||||||||||  |||||||||||| ||||||||||||||||| ||||    
T  5009247 aatctgttacaaaccacaaacttaaatgacttatgtgtgaacaaaataacttaaaaggaccaatctattacaaacctcaaacttaaagaaccc 5009155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 36217163 - 36217279
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa-accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaaaccaatctattataa 114  Q
    |||||||||||  |||||| ||||| | |||||||||||||||||||||||||||  ||||| |||||| | ||||||||| |||| |||| | ||| ||    
T  36217163 ttatgtgtgaccaaaataatttaaagatcaatctgttacaaacctcaaacttaaaagacttatgtgtgaccaaaataactt-aaaatcaatttgttacaa 36217261  T
Q  115 acctcaaacttaaaggac 132  Q
    ||||||||||||||||||    
T  36217262 acctcaaacttaaaggac 36217279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 36217222 - 36217282
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaaccaatctgttacaaacctcaaacttaaagaactta 77  Q
    |||||||||||  ||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  36217222 ttatgtgtgaccaaaataacttaaaatcaatttgttacaaacctcaaacttaaaggactta 36217282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 31630294 - 31630409
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaa-ccaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattata 113  Q
    |||||||||||  ||||||||||||| ||||||| |||| ||||||||| |||||| ||||  |||||| | ||||||||||||  | ||||||  ||||    
T  31630294 ttatgtgtgaccaaaataacttaaaaaccaatctattactaacctcaaatttaaaggacttttgtgtgaccaaaataacttaaatgatcaatcttctata 31630393  T
Q  114 aacctcaaacttaaag 129  Q
    ||||||||||||||||    
T  31630394 aacctcaaacttaaag 31630409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 31630281 - 31630352
Alignment:
Q  61 caaacttaaagaacttacgtgtgatcaaa-taacttaaaaaccaatctattataaacctcaaacttaaaggac 132  Q
    |||||||||||| |||| |||||| |||| ||||||||||||||||||||||  ||||||||| |||||||||    
T  31630281 caaacttaaaga-cttatgtgtgaccaaaataacttaaaaaccaatctattactaacctcaaatttaaaggac 31630352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 51 - 133
Target Start/End: Complemental strand, 44556607 - 44556523
Alignment:
Q  51 ttacaaacctcaaacttaaagaacttacgtgtgatcaaataa-cttaaaa-accaatctattataaacctcaaacttaaaggacc 133  Q
    ||||||||||||||||||||| ||||| ||||||  ||| || ||||||  |||||||||||| |||||| ||||||||||||||    
T  44556607 ttacaaacctcaaacttaaaggacttatgtgtgacaaaaaaaacttaaatgaccaatctattacaaaccttaaacttaaaggacc 44556523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 45388497 - 45388543
Alignment:
Q  87 aaataacttaaaaaccaatctattataaacctcaaacttaaaggacc 133  Q
    ||||||||||||||| ||||||||||||| |||||||||||| ||||    
T  45388497 aaataacttaaaaactaatctattataaatctcaaacttaaaagacc 45388543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 1316119 - 1316022
Alignment:
Q  49 tgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaaggacccaagtgtaatt 144  Q
    ||||||||||||||||| ||||| ||||| |||||| | ||||||||||||  | | |||||||| |||||||||| |||||||| ||  ||||||||    
T  1316119 tgttacaaacctcaaacataaaggacttatgtgtgaccaaaataacttaaacgatctatctattacaaacctcaaatttaaaggatcctggtgtaatt 1316022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 123
Target Start/End: Original strand, 12612656 - 12612732
Alignment:
Q  49 tgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaa-accaatctattataaacctcaaac 123  Q
    |||||||||||| |||||||||||||||| || ||||| |||||| |||||| | |||||||||| ||| |||||||    
T  12612656 tgttacaaacctaaaacttaaagaacttaggtatgatcaaaataatttaaaagatcaatctattacaaatctcaaac 12612732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 5009217 - 5009157
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaa---ccaatctgttacaaacctcaaacttaaagaac 74  Q
    ||||||||||   |||||||||||||   ||||||| ||||||||||||||||||||||||    
T  5009217 ttatgtgtgaacaaaataacttaaaaggaccaatctattacaaacctcaaacttaaagaac 5009157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 12612518 - 12612448
Alignment:
Q  61 caaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaag 129  Q
    ||||||||||  ||||| ||||||||||| ||| |||||| |||||||||||| |||||| ||||||||||    
T  12612518 caaacttaaatgacttatgtgtgatcaaaataatttaaaagaccaatctattacaaaccttaaacttaaag 12612448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 36694533 - 36694590
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaaga 72  Q
    |||||||||||  |||||| |||||  ||||||||||||||||||||||| |||||||    
T  36694533 ttatgtgtgaccaaaataatttaaaggaccaatctgttacaaacctcaaaattaaaga 36694590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 29379912 - 29380028
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattat 112  Q
    |||||||||||  |||||| |||||  || ||| |||||||||| |||||||||||| | ||| ||| |  | ||||||||||||  |||||| |||||     
T  29379912 ttatgtgtgaccaaaataatttaaaggactaatatgttacaaacgtcaaacttaaaggaattatgtgaggccaaaataacttaaatgaccaatttattac 29380011  T
Q  113 aaacctcaaacttaaag 129  Q
    |||||||||||||||||    
T  29380012 aaacctcaaacttaaag 29380028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 75
Target Start/End: Original strand, 4056934 - 4056962
Alignment:
Q  47 tctgttacaaacctcaaacttaaagaact 75  Q
    |||||||||||||||||||||||||||||    
T  4056934 tctgttacaaacctcaaacttaaagaact 4056962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 11791449 - 11791373
Alignment:
Q  61 caaacttaaagaacttacgtgtgatc-aaataacttaaaa-accaatctattataaacctcaaacttaaaggaccca 135  Q
    |||||||||| ||||||||||||| | |||||| |||||| ||| || |||||||||| ||| ||||||| ||||||    
T  11791449 caaacttaaataacttacgtgtgaccaaaataatttaaaatacctatttattataaacgtcatacttaaaagaccca 11791373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 29379985 - 29380032
Alignment:
Q  30 aaataacttaaa--accaatctgttacaaacctcaaacttaaagaact 75  Q
    ||||||||||||  |||||| | |||||||||||||||||||||||||    
T  29379985 aaataacttaaatgaccaatttattacaaacctcaaacttaaagaact 29380032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 44556656 - 44556584
Alignment:
Q  62 aaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaaggac 132  Q
    |||||||||| ||||| ||||||||||| ||| |||||  | |||| ||||| ||||||||||||||||||||    
T  44556656 aaacttaaaggacttatgtgtgatcaaaataagttaaaggatcaatttattacaaacctcaaacttaaaggac 44556584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 27128094 - 27128214
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaac---caatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaaaccaatctattat 112  Q
    |||||||||||  |||||||||||||    |||| ||||| |||||| |||||||||| ||||  ||||||||||| |||| |||||||||||||||||     
T  27128094 ttatgtgtgaccaaaataacttaaaaagatcaatttgttagaaaccttaaacttaaaggacttgtgtgtgatcaaaataacctaaaaaccaatctattac 27128193  T
Q  113 aaacctcaaacttaaaggacc 133  Q
    |||||||||||||||||||||    
T  27128194 aaacctcaaacttaaaggacc 27128214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 24827475 - 24827355
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaa-ataacttaaaa-accaatctattat 112  Q
    |||||||||||| ||||||||||||  || ||||| |||||||| |||||||||||| |||||  ||||||||| ||||||||||  |||||||| |||     
T  24827475 ttatgtgtgactaaaataacttaaatgacaaatctattacaaacatcaaacttaaaggacttagttgtgatcaatataacttaaatgaccaatctgttac 24827376  T
Q  113 aaacctcaaacttaaaggacc 133  Q
    |||||||||||||||||||||    
T  24827375 aaacctcaaacttaaaggacc 24827355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 6220402 - 6220521
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaa-aaccaatctattat 112  Q
    |||||||||||   |||||||||||  |||||||||||||||| ||||||||||||||||||| ||||||   |||||||||||| ||||||| | |||     
T  6220402 ttatgtgtgaccacaataacttaaagtaccaatctgttacaaatctcaaacttaaagaacttatgtgtgacaaaaataacttaaagaaccaatttgttac 6220501  T
Q  113 aaacctcaaacttaaaggac 132  Q
    ||||||||||||||||||||    
T  6220502 aaacctcaaacttaaaggac 6220521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 41151523 - 41151403
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattat 112  Q
    |||||||||||  ||||||||||||  ||||||||||||| || ||||||||||||| ||||| |||||||| ||||||||||||  |||||| | |||     
T  41151523 ttatgtgtgaccaaaataacttaaaggaccaatctgttactaaactcaaacttaaaggacttatgtgtgatcaaaataacttaaaggaccaatatgttac 41151424  T
Q  113 aaacctcaaacttaaaggacc 133  Q
    ||| |||||||||||||||||    
T  41151423 aaaactcaaacttaaaggacc 41151403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 9399934 - 9399813
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaac--caatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaa-aaccaatctattat 112  Q
    |||||||||||  ||||||||||||    || ||| |||||||||| |||||||||| |||||||||||| |||| ||||||||| ||||||| | |||     
T  9399934 ttatgtgtgaccaaaataacttaaagagtcactctattacaaaccttaaacttaaaggacttacgtgtgaccaaagtaacttaaagaaccaatatgttac 9399835  T
Q  113 aaacctcaaacttaaaggaccc 134  Q
    ||||||||||||||||||||||    
T  9399834 aaacctcaaacttaaaggaccc 9399813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 24909650 - 24909744
Alignment:
Q  42 accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaaggaccc 134  Q
    ||||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||  |||||| | ||| ||| ||||||||||||||||||    
T  24909650 accaatctgctacaaacctcaaacttaaaggacttatgtgtgatcaaaataacttaaaggaccaatttgttacaaatctcaaacttaaaggaccc 24909744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 24083264 - 24083365
Alignment:
Q  30 aaataacttaaaac-caatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaactta 126  Q
    |||||||||||||  |||||||||||||||||||||||||||   |||| |||||||| |||||||||||| ||||||||||||| || | |||||||||    
T  24083264 aaataacttaaaaatcaatctgttacaaacctcaaacttaaaagccttatgtgtgatcaaaataacttaaataaccaatctattacaaccttcaaactta 24083363  T
Q  127 aa 128  Q
    ||    
T  24083364 aa 24083365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 27052526 - 27052406
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaaa-accaatctattat 112  Q
    ||||||||||| |||||||||||||  |||||| |||||||||||| |||||||||  |||||  ||||| | |||||||||||   ||||||||||||     
T  27052526 ttatgtgtgaccgaaataacttaaaggaccaatgtgttacaaaccttaaacttaaatgacttatatgtgactaaaataacttaagggaccaatctattac 27052427  T
Q  113 aaacctcaaacttaaaggacc 133  Q
    |||| ||||||||||||||||    
T  27052426 aaacatcaaacttaaaggacc 27052406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 27052613 - 27052729
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaa-aaccaatctattat 112  Q
    ||||||||||   ||||||||||||  |||||||||||| ||||||||||||||||| ||||| ||| ||   |||||||||||| || ||||||||||     
T  27052613 ttatgtgtgatcaaaataacttaaaggaccaatctgttataaacctcaaacttaaaggacttatgtgcgacaaaaataacttaaagaatcaatctattac 27052712  T
Q  113 aaacctcaaacttaaag 129  Q
    |||||||||||||||||    
T  27052713 aaacctcaaacttaaag 27052729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 27127992 - 27127876
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaa-aaccaatctattat 112  Q
    |||||||||||  ||||||||||||  | ||||||||||||||| |||||||||||  ||||| ||||||||||| ||||||||| ||||||||| |||     
T  27127992 ttatgtgtgaccaaaataacttaaagaatcaatctgttacaaac-tcaaacttaaa--acttatgtgtgatcaaaataacttaaataaccaatctgttac 27127896  T
Q  113 aaacctcaaacttaaaggacc 133  Q
    |||| ||||||||||||||||    
T  27127895 aaac-tcaaacttaaaggacc 27127876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 16913092 - 16913000
Alignment:
Q  42 accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaa-accaatctattataaacctcaaacttaaaggac 132  Q
    ||||||||||||| |||||||||||||||||| |||  ||||||| ||||||||||||| |||| | ||||| ||| ||||||| ||||||||    
T  16913092 accaatctgttacgaacctcaaacttaaagaatttatatgtgatcaaaataacttaaaagaccattttattacaaatctcaaacataaaggac 16913000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 36053066 - 36053181
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaaaaccaatctattata 113  Q
    |||||||||||| ||||||||||||  | |||| | |||||||||||||| |||||  |||||  ||||| | ||||||||||||||| ||| ||||| |    
T  36053066 ttatgtgtgactaaaataacttaaaggatcaatattttacaaacctcaaatttaaatgacttatatgtgactaaaataacttaaaaacaaatttattaca 36053165  T
Q  114 aacctcaaacttaaag 129  Q
    ||| ||||||||||||    
T  36053166 aacgtcaaacttaaag 36053181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 6220301 - 6220180
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaa-aaccaatctattat 112  Q
    |||||||||||  |||| |||||||  ||||||| |||||||||||||||||||||| |||||  ||| |   ||||||||||||  |||||| | ||      
T  6220301 ttatgtgtgacaaaaattacttaaatgaccaatcagttacaaacctcaaacttaaaggacttatctgttacaaaaataacttaaaggaccaatttgtttc 6220202  T
Q  113 aaacctcaaacttaaaggaccc 134  Q
    ||||||||||||||||||||||    
T  6220201 aaacctcaaacttaaaggaccc 6220180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 134
Target Start/End: Complemental strand, 27855648 - 27855554
Alignment:
Q  42 accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaaggaccc 134  Q
    ||||||||| |||||||||| ||||||||  | ||| ||||| ||||| |||||||||  |||||||||||| |||||| |||||||||| ||||    
T  27855648 accaatctgctacaaacctcgaacttaaatgatttatgtgtgttcaaaataacttaaaggaccaatctattacaaaccttaaacttaaagaaccc 27855554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 27052560 - 27052471
Alignment:
Q  41 aaccaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaa 128  Q
    ||||||||| ||||||| ||||||||||||| ||||| |||||| | ||||||||||||  |||||| | ||| |||||| |||||||||    
T  27052560 aaccaatctattacaaatctcaaacttaaaggacttatgtgtgaccgaaataacttaaaggaccaatgtgttacaaaccttaaacttaaa 27052471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 41151625 - 41151741
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaactt-aaagaacttacgtgtgatc-aaataacttaaa-aaccaatctatta 111  Q
    |||||||||||  ||| ||||||||  |||||||||||||||||| | ||||| |||| ||||| |||||| | ||||||||||||  || ||||| |||    
T  41151625 ttatgtgtgaccaaaagaacttaaaggaccaatctgttacaaaccacgaacttaaaaggacttatgtgtgaccaaaataacttaaaggactaatctgtta 41151724  T
Q  112 taaacctcaaacttaaa 128  Q
     ||||||||||||||||    
T  41151725 caaacctcaaacttaaa 41151741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 9400046 - 9400161
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattat 112  Q
    |||||||||||  ||||||||||||  |||||  || ||||||||||||||| |||||| ||| |||||| | ||||||||||||  | |||| | |||     
T  9400046 ttatgtgtgaccaaaataacttaaaggaccaacatgctacaaacctcaaactcaaagaatttatgtgtgaccaaaataacttaaacgatcaatatgttac 9400145  T
Q  113 aaacctcaaacttaaa 128  Q
    ||||||||||||||||    
T  9400146 aaacctcaaacttaaa 9400161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 15563928 - 15563841
Alignment:
Q  49 tgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaaaaccaatctattataaacctcaaacttaaaggaccca 135  Q
    |||||||| |||||||||||||  ||||| |||||| | ||||||||||||||  ||||| ||| |||||| ||| ||||| ||||||    
T  15563928 tgttacaaccctcaaacttaaaagacttatgtgtgactaaaataacttaaaaattaatctgttacaaaccttaaatttaaaagaccca 15563841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 27052617 - 27052672
Alignment:
Q  79 gtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaaggac 132  Q
    ||||||||||| |||||||||  |||||||| ||||||||||||||||||||||||    
T  27052617 gtgtgatcaaaataacttaaaggaccaatctgttataaacctcaaacttaaaggac 27052672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 14550024 - 14549946
Alignment:
Q  67 taaagaacttacgtgtgatcaaa-taacttaaa-aaccaatctattataaacctcaaacttaaaggacccaagtgtaat 143  Q
    ||||||||||| |||||| |||| |||| |||| ||||||| ||||| |||||||||||||| ||||||  ||||||||    
T  14550024 taaagaacttatgtgtgaccaaaataacataaagaaccaatatattacaaacctcaaacttagaggaccttagtgtaat 14549946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 38414694 - 38414638
Alignment:
Q  34 aacttaaaac--caatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa 89  Q
    ||||||||||  ||||||||||||||||||||||||||| || ||| |||||||||||    
T  38414694 aacttaaaacatcaatctgttacaaacctcaaacttaaa-aatttatgtgtgatcaaa 38414638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 9400105 - 9400161
Alignment:
Q  16 tttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaa 70  Q
    ||||||||||||  ||||||||||||  | |||| ||||||||||||||||||||||    
T  9400105 tttatgtgtgaccaaaataacttaaacgatcaatatgttacaaacctcaaacttaaa 9400161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 20209479 - 20209598
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattat 112  Q
    |||| ||||||  ||||||||||||  | |||||||||||||||||||||| ||||  ||||| |||||| | |||||| |||||  || ||| | |||     
T  20209479 ttatttgtgaccaaaataacttaaaggatcaatctgttacaaacctcaaacgtaaaagacttatgtgtgaccaaaataatttaaaggactaatatgttac 20209578  T
Q  113 aaacctcaaacttaaaggac 132  Q
    |||||||||| |||||||||    
T  20209579 aaacctcaaatttaaaggac 20209598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 20229187 - 20229306
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattat 112  Q
    |||| ||||||  ||||||||||||  | |||||||||||||||||||||| ||||  ||||| |||||| | |||||| |||||  || ||| | |||     
T  20229187 ttatttgtgaccaaaataacttaaaggatcaatctgttacaaacctcaaacgtaaaagacttatgtgtgaccaaaataatttaaaggactaatatgttac 20229286  T
Q  113 aaacctcaaacttaaaggac 132  Q
    |||||||||| |||||||||    
T  20229287 aaacctcaaatttaaaggac 20229306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 30869632 - 30869737
Alignment:
Q  30 aaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaactt 125  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||| || ||| | ||||||||||||  ||||||| |||| |||||||||||||    
T  30869632 aaataacttaaaggaccaatctgttacaaacctcaaacttaaagaacttatgtatgaccaaaataacttaaaggaccaatcaattacaaacctcaaactt 30869731  T
Q  126 aaagga 131  Q
    ||||||    
T  30869732 aaagga 30869737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 11975565 - 11975451
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa--taacttaaaaaccaatctattat 112  Q
    |||||||||||   |||||||||||  | |||| ||||||||||||||||||||||| ||||| ||||| |||||  |||||||||||| ||| |||||     
T  11975565 ttatgtgtgaccacaataacttaaaggatcaatatgttacaaacctcaaacttaaaggacttatgtgtg-tcaaaaataacttaaaaactaatttattac 11975467  T
Q  113 aaacctcaaacttaaa 128  Q
    ||||||||||||||||    
T  11975466 aaacctcaaacttaaa 11975451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 29710539 - 29710671
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaa-accaatctattat 112  Q
    |||||||||||  ||||||||||||  ||||||| |||||||| ||||||||||||  ||||| |||| | | ||||||| ||||| |||||||| |||     
T  29710539 ttatgtgtgacgaaaataacttaaaggaccaatccgttacaaatctcaaacttaaatgacttatgtgttaccaaaataacctaaaagaccaatctgttac 29710638  T
Q  113 aaacctcaaacttaaaggac-ccaagtgtaatt 144  Q
    |||| ||||||||||||||| ||||||||||||    
T  29710639 aaacgtcaaacttaaaggactccaagtgtaatt 29710671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 133
Target Start/End: Complemental strand, 42312850 - 42312757
Alignment:
Q  42 accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaaggacc 133  Q
    |||||||| ||||||| ||||||||||||| ||||| |||||| | ||||||||||||  |||||| ||||| |||||||||||||||||||||    
T  42312850 accaatctattacaaatctcaaacttaaaggacttatgtgtgaccaaaataacttaaatgaccaatatattacaaacctcaaacttaaaggacc 42312757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 4048305 - 4048205
Alignment:
Q  32 ataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaa 127  Q
    ||||||||||  |||||| |||||||||||||| |||||||||||||| |||||| | |||||||||||| ||  | ||||||| |||||||||||||||    
T  4048305 ataacttaaaggaccaatatgttacaaacctcagacttaaagaacttatgtgtgaccaaaataacttaaagaattagtctattacaaacctcaaacttaa 4048206  T
Q  128 a 128  Q
    |    
T  4048205 a 4048205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 6222197 - 6222079
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaaa-accaatctattat 112  Q
    |||||||||||  ||||||||||||  || |||||||||||||  | ||||||||||| |||| |||||| | ||||||||||||| |||||| |||||     
T  6222197 ttatgtgtgaccaaaataacttaaataactaatctgttacaaattttaaacttaaaga-cttatgtgtgactaaaataacttaaaagaccaatatattac 6222099  T
Q  113 aaacctcaaacttaaaggac 132  Q
    |||||| |||||||||||||    
T  6222098 aaaccttaaacttaaaggac 6222079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 6694636 - 6694533
Alignment:
Q  30 aaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaactt 125  Q
    ||||||||||||  | |||||| ||||||||| ||||||||||| ||||| ||| || |||| |||||||||| |||||| ||||| |||||||||||||    
T  6694636 aaataacttaaaggatcaatctattacaaaccacaaacttaaaggacttatgtgggaacaaaataacttaaaagaccaatttattacaaacctcaaactt 6694537  T
Q  126 aaag 129  Q
    ||||    
T  6694536 aaag 6694533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 3198329 - 3198260
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaa--ccaatctgttacaaacctcaaacttaaagaacttacgtgtga 84  Q
    ||||||| |||  |||||||||||||  ||||| ||||||||||||||||||||||||||||| ||||||    
T  3198329 ttatgtgggaccaaaataacttaaaagaccaatttgttacaaacctcaaacttaaagaacttatgtgtga 3198260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 11975660 - 11975781
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaa-aaccaatctattat 112  Q
    |||||||||||  ||||||||||||  ||||||| |||||||||||||||||||||| |||||  ||| |   ||||||||||||  |||||||| ||      
T  11975660 ttatgtgtgacaaaaataacttaaaggaccaatcagttacaaacctcaaacttaaaggacttatctgttacaaaaataacttaaaggaccaatctgtttc 11975759  T
Q  113 aaacctcaaacttaaaggaccc 134  Q
    ||| ||||||||||||||||||    
T  11975760 aaatctcaaacttaaaggaccc 11975781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 29019292 - 29019255
Alignment:
Q  33 taacttaaaaccaatctgttacaaacctcaaacttaaa 70  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29019292 taacttaaaaccaatctgttacaaacctcaaacttaaa 29019255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 27576550 - 27576669
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattat 112  Q
    |||||||||||  ||||||| ||||  ||||||| ||||||||  |||||||||||  ||||| |||||| |||| |||||||||  |||||||| |||     
T  27576550 ttatgtgtgaccaaaataacctaaaggaccaatcagttacaaatatcaaacttaaatgacttatgtgtgaccaaaataacttaaaggaccaatctgttac 27576649  T
Q  113 aaacctcaaacttaaaggac 132  Q
    |||| |||||||||||||||    
T  27576650 aaacgtcaaacttaaaggac 27576669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 6694749 - 6694805
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaag 71  Q
    |||||||||||  ||||||||||||  |||||| |||||||||||||||||||||||    
T  6694749 ttatgtgtgaccaaaataacttaaaggaccaatatgttacaaacctcaaacttaaag 6694805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 31453061 - 31453117
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaag 71  Q
    |||||||||||  ||||||||||||  || |||||||||||||||||||||||||||    
T  31453061 ttatgtgtgacaaaaataacttaaataactaatctgttacaaacctcaaacttaaag 31453117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 144
Target Start/End: Original strand, 6694736 - 6694820
Alignment:
Q  62 aaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaaggacccaagtgtaatt 144  Q
    |||||||||| ||||| |||||| |||| |||||||||  |||||| | ||| ||||||||||||||||||||||  ||||||||    
T  6694736 aaacttaaaggacttatgtgtgaccaaaataacttaaaggaccaatatgttacaaacctcaaacttaaaggacccgggtgtaatt 6694820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 31453045 - 31453121
Alignment:
Q  59 ctcaaacttaaagaacttacgtgtgatcaaa-taacttaaa-aaccaatctattataaacctcaaacttaaaggacc 133  Q
    ||||||||||||| ||||| ||||||  ||| ||||||||| ||| ||||| ||| |||||||||||||||||||||    
T  31453045 ctcaaacttaaaggacttatgtgtgacaaaaataacttaaataactaatctgttacaaacctcaaacttaaaggacc 31453121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 3198467 - 3198514
Alignment:
Q  87 aaataacttaaa-aaccaatctattataaacctcaaacttaaaggacc 133  Q
    |||||||||||| ||||||| ||||||| |||||||||||||||||||    
T  3198467 aaataacttaaataaccaatttattatagacctcaaacttaaaggacc 3198514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 29710434 - 29710317
Alignment:
Q  21 gtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaac 116  Q
    |||||||  ||||||||||||  |||||| |||||||||  |||||||||||| |||||  ||||| |||| |||||||||  |  ||||| ||| ||||    
T  29710434 gtgtgaccaaaataacttaaaggaccaatatgttacaaatatcaaacttaaaggacttatatgtgaccaaaataacttaaaggattaatctgttacaaac 29710335  T
Q  117 ctcaaacttaaaggaccc 134  Q
     |||||||||||||||||    
T  29710334 gtcaaacttaaaggaccc 29710317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 30869605 - 30869675
Alignment:
Q  61 caaacttaaagaacttacgtgtgat-caaataacttaaa-aaccaatctattataaacctcaaacttaaag 129  Q
    ||||||||||| ||||||| |||||  ||||||||||||  |||||||| ||| |||||||||||||||||    
T  30869605 caaacttaaaggacttacgcgtgataaaaataacttaaaggaccaatctgttacaaacctcaaacttaaag 30869675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 40951862 - 40951918
Alignment:
Q  16 tttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaa 70  Q
    ||||||||||||  ||||||||||||  | |||||| ||||||||||||||||||||    
T  40951862 tttatgtgtgaccaaaataacttaaatgatcaatctattacaaacctcaaacttaaa 40951918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 41666363 - 41666419
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaag 71  Q
    ||||||||||  ||||||||||||   || |||||||||||||||||||||||||||    
T  41666363 ttatgtgtgatcgaaataacttaagggacaaatctgttacaaacctcaaacttaaag 41666419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 42312817 - 42312761
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaag 71  Q
    |||||||||||  ||||||||||||  |||||| | |||||||||||||||||||||    
T  42312817 ttatgtgtgaccaaaataacttaaatgaccaatatattacaaacctcaaacttaaag 42312761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 43258461 - 43258522
Alignment:
Q  62 aaacttaaagaacttacgtgtgatc-aaataacttaaaaaccaatctattataaacctcaaa 122  Q
    |||||||||| ||||| |||||||| |||||| ||||||| |||||||||| ||| ||||||    
T  43258461 aaacttaaaggacttatgtgtgatcaaaataatttaaaaatcaatctattacaaatctcaaa 43258522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 6694662 - 6694590
Alignment:
Q  61 caaacttaaagaacttacgtgtgatcaaataacttaaaa-accaatctattataaacctcaaacttaaaggac 132  Q
    ||||||||||| ||||| |||| |  ||||||||||||  | |||||||||| ||||| ||||||||||||||    
T  6694662 caaacttaaaggacttatgtgtaacaaaataacttaaaggatcaatctattacaaaccacaaacttaaaggac 6694590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 30662244 - 30662188
Alignment:
Q  44 caatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaa 99  Q
    |||||||||| ||| ||||||||||||| ||||| |||| ||| |||||||||||||    
T  30662244 caatctgttataaatctcaaacttaaaggacttatgtgtaatcaaaataacttaaaa 30662188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 44293991 - 44294110
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattat 112  Q
    |||| ||||||  ||||||||||||  | |||||||||||||||||||||| ||||  ||||| |||||| | |||||| |||||  || ||| | |||     
T  44293991 ttatttgtgaccaaaataacttaaaggatcaatctgttacaaacctcaaacgtaaaagacttatgtgtgaccaaaataatttaaaggactaatatgttac 44294090  T
Q  113 aaacctcaaacttaaaggac 132  Q
    |||||||||| |||||||||    
T  44294091 aaacctcaaatttaaaggac 44294110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 46713292 - 46713213
Alignment:
Q  51 ttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaag 129  Q
    |||||||| |||||||||||| ||||| || ||| | |||||||||||| ||| ||||||||| |||||||||| ||||||    
T  46713292 ttacaaacttcaaacttaaag-acttatgtatgaccaaaataacttaaataactaatctattacaaacctcaaatttaaag 46713213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 28814044 - 28814138
Alignment:
Q  42 accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaa-accaatctattataaacctcaaacttaaaggaccc 134  Q
    |||||||| ||||||||||||||||||||||||||| || ||||| ||||||||||||| || ||||||||| |||||||||| |||||||||||    
T  28814044 accaatctattacaaacctcaaacttaaagaacttatgtctgatcaaaataacttaaaagactaatctattacaaacctcaaatttaaaggaccc 28814138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 252133 - 252048
Alignment:
Q  46 atctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaag 129  Q
    ||||||||||||||| |||||||||| |||||||||||| | ||||||||||||  ||||||||||||||||||||||||||||||    
T  252133 atctgttacaaaccttaaacttaaaggacttacgtgtgaccaaaataacttaaatgaccaatctattataaacctcaaacttaaag 252048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 47069646 - 47069523
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattat 112  Q
    |||||||||||  |||||||| |||  |||||| ||||||||| ||||||||||||||||||| |||||||| ||||||||||||  |||||| | |||     
T  47069646 ttatgtgtgaccaaaataactaaaagaaccaatttgttacaaaactcaaacttaaagaacttatgtgtgatcaaaataacttaaaggaccaatatgttac 47069547  T
Q  113 aaacctcaaacttaaaggacccaa 136  Q
    |||||||||| |||||||||||||    
T  47069546 aaacctcaaatttaaaggacccaa 47069523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 18020041 - 18020162
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaa-aaccaatctattat 112  Q
    |||||||| ||  ||||||||||||  |||||||||||| |||||| |||||||||| ||||| || ||| |||| ||||||||| || ||||||||||     
T  18020041 ttatgtgtaaccaaaataacttaaacgaccaatctgttataaaccttaaacttaaaggacttatgtttgaccaaaataacttaaataatcaatctattac 18020140  T
Q  113 aaacctcaaacttaaaggaccc 134  Q
    ||||||||||||||||||||||    
T  18020141 aaacctcaaacttaaaggaccc 18020162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 25848577 - 25848700
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaac--caatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa--accaatctatta 111  Q
    |||||||||| | |||||||||||||   |||| | ||||||||||||||||| ||| ||||| |||| | |||| ||||||||||  |||||| |||||    
T  25848577 ttatgtgtgattaaaataacttaaaagatcaatttattacaaacctcaaactttaaggacttatgtgttaccaaaataacttaaaaggaccaatttatta 25848676  T
Q  112 taaacctcaaacttaaaggaccca 135  Q
    ||||||||||||||||||||||||    
T  25848677 taaacctcaaacttaaaggaccca 25848700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 26724244 - 26724349
Alignment:
Q  30 aaataacttaaaaccaatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaa-aaccaatctattataaacctcaaacttaa 127  Q
    |||||||||||||| ||||||||| | |||||||| |||||| ||||| ||||||   |||||||||||| || |||||||||| |||||||||||||||    
T  26724244 aaataacttaaaactaatctgttagagacctcaaatttaaaggacttatgtgtgacgaaaataacttaaagaatcaatctattacaaacctcaaacttaa 26724343  T
Q  128 aggacc 133  Q
    ||||||    
T  26724344 aggacc 26724349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 30954964 - 30955078
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaa---ccaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaaaccaatctattat 112  Q
    |||||||||||  |||||||||||||   ||||||| ||||||| ||||||| ||||| ||||| |||||| |||| ||||||||| || |||||||||     
T  30954964 ttatgtgtgaccaaaataacttaaaaggaccaatctcttacaaatctcaaacataaaggacttatgtgtgaccaaaataacttaaacactaatctattac 30955063  T
Q  113 aaacctcaaacttaa 127  Q
    |||||||||||||||    
T  30955064 aaacctcaaacttaa 30955078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 30970776 - 30970890
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaa---ccaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaaaccaatctattat 112  Q
    |||||||||||  |||||||||||||   ||||||| ||||||| ||||||| ||||| ||||| |||||| |||| ||||||||| || |||||||||     
T  30970776 ttatgtgtgaccaaaataacttaaaaggaccaatctcttacaaatctcaaacataaaggacttatgtgtgaccaaaataacttaaacactaatctattac 30970875  T
Q  113 aaacctcaaacttaa 127  Q
    |||||||||||||||    
T  30970876 aaacctcaaacttaa 30970890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 28813955 - 28813843
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaaaccaatctattata 113  Q
    |||||||||||  ||||||||||||  | |||| | ||||||| |||||||||||||||||||  ||||| | |||||||||||| | |||||||||| |    
T  28813955 ttatgtgtgaccaaaataacttaaatgatcaatttattacaaatctcaaacttaaagaacttatatgtgacctaaataacttaaagatcaatctattaca 28813856  T
Q  114 aacctcaaactta 126  Q
    |||||||||||||    
T  28813855 aacctcaaactta 28813843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 25848518 - 25848636
Alignment:
Q  18 tatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaaa-accaatctattata 113  Q
    ||||||||||  ||||||||||||  |||||| |||||||||||| ||| |||||| ||||| |||||| | ||||||||||||| | |||| ||||| |    
T  25848518 tatgtgtgaccaaaataacttaaaggaccaatgtgttacaaacctaaaatttaaaggacttatgtgtgattaaaataacttaaaagatcaatttattaca 25848617  T
Q  114 aacctcaaacttaaaggac 132  Q
    |||||||||||| ||||||    
T  25848618 aacctcaaactttaaggac 25848636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 36667368 - 36667454
Alignment:
Q  44 caatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaa 128  Q
    ||||| |||||||||||||||||||||||||||| |||||  | |||||||| |||  |||||||||||| ||||||||||||||||    
T  36667368 caatcagttacaaacctcaaacttaaagaacttaggtgtgtccaaaataactaaaatgaccaatctattacaaacctcaaacttaaa 36667454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 40209894 - 40210008
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaaccaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaaaccaatctattataaa 115  Q
    |||||||||||  ||||| |||||||||||||||||  | ||||||||||||||||| ||| |||||| | |||||| ||||| | |||| | ||| |||    
T  40209894 ttatgtgtgaccaaaatatcttaaaaccaatctgttcgagacctcaaacttaaagaa-ttatgtgtgaccaaaataaattaaagatcaatatgttagaaa 40209992  T
Q  116 cctcaaacttaaagga 131  Q
     |||||||||||||||    
T  40209993 tctcaaacttaaagga 40210008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 36900092 - 36900209
Alignment:
Q  16 tttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctatta 111  Q
    |||||||| || | ||||||||||||  | |||||| |||||||||| |||||||||| || || |||| | |||| |||||||||  ||||||||||||    
T  36900092 tttatgtgagattaaaataacttaaacgatcaatctcttacaaaccttaaacttaaaggacctatgtgtaaccaaaataacttaaaggaccaatctatta 36900191  T
Q  112 taaacctcaaacttaaag 129  Q
    |||| |||||||||||||    
T  36900192 taaatctcaaacttaaag 36900209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 47891339 - 47891460
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattat 112  Q
    |||||||||||  ||||||||||||  |||||| |||| ||||||||||||| |||| ||||| |||||||| ||||||||||||  | |||| | |||     
T  47891339 ttatgtgtgaccaaaataacttaaaggaccaatatgttgcaaacctcaaactcaaaggacttatgtgtgatcaaaataacttaaaggatcaatttgttac 47891438  T
Q  113 aaacctcaaacttaaaggaccc 134  Q
    |||  |||||||||||||||||    
T  47891439 aaatttcaaacttaaaggaccc 47891460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 40286471 - 40286587
Alignment:
Q  22 tgtgactgaaataacttaaaa--ccaatctgttacaaacctcaaacttaaagaacttacgtgtgat-caaataacttaaa-aaccaatctattataaacc 117  Q
    ||||||| |||||||| ||||  ||||||||||||||||||||||||||||| ||||| ||| |||  ||||||||||||  | ||| |  ||| |||||    
T  40286471 tgtgactaaaataactcaaaagaccaatctgttacaaacctcaaacttaaaggacttatgtgcgataaaaataacttaaaggatcaaacggttacaaacc 40286570  T
Q  118 tcaaacttaaaggaccc 134  Q
    ||||| |||||||||||    
T  40286571 tcaaatttaaaggaccc 40286587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 32186691 - 32186766
Alignment:
Q  16 tttatgtgtgactgaaataacttaaaac--caatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa 89  Q
    ||||||||| ||  ||||||||||||||  |||| ||||||||||||||||||||||| ||||| |||||| ||||    
T  32186691 tttatgtgtaaccaaaataacttaaaacatcaatatgttacaaacctcaaacttaaaggacttatgtgtgaccaaa 32186766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 3169797 - 3169715
Alignment:
Q  49 tgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaa-aaccaatctattataaacctcaaacttaaag 129  Q
    ||||||||||||||||||||||  | |||  ||||| | |||||||||||| ||||||||||||| |||||| ||||||||||    
T  3169797 tgttacaaacctcaaacttaaaagatttatatgtgactaaaataacttaaagaaccaatctattacaaaccttaaacttaaag 3169715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 27658040 - 27657986
Alignment:
Q  16 tttatgtgtgactgaaataactt-aaaaccaatctgttacaaacctcaaacttaa 69  Q
    ||||||||||||||||||||||| ||||| ||| ||| |||||||||||||||||    
T  27658040 tttatgtgtgactgaaataacttaaaaactaatgtgtgacaaacctcaaacttaa 27657986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 134
Target Start/End: Complemental strand, 32186545 - 32186459
Alignment:
Q  50 gttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaaggaccc 134  Q
    |||| ||||||||||||||||  ||||| |||||| |||| || ||||||  |||||| ||||| ||||||||||||||||||||||    
T  32186545 gttataaacctcaaacttaaaagacttaggtgtgaccaaaatagcttaaaggaccaatatattacaaacctcaaacttaaaggaccc 32186459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 43650103 - 43649990
Alignment:
Q  16 tttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaaa-accaatctatta 111  Q
    |||||||||||   ||||||||||||  |||||||| |||||| |||||||||||||| | ||| ||||||   ||||||||||||| |||||| |||||    
T  43650103 tttatgtgtgatcaaaataacttaaatgaccaatctcttacaatcctcaaacttaaaggatttatgtgtgacgaaaataacttaaaagaccaatttatta 43650004  T
Q  112 taaacctcaaactt 125  Q
     ||| |||||||||    
T  43650003 caaatctcaaactt 43649990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 3169772 - 3169712
Alignment:
Q  16 tttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaac 74  Q
    ||||| ||||||| ||||||||||||  |||||||| |||||||||| |||||||||||||    
T  3169772 tttatatgtgactaaaataacttaaagaaccaatctattacaaaccttaaacttaaagaac 3169712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 47573784 - 47573691
Alignment:
Q  44 caatctgttacaaacctcaaacttaaagaacttacgtgtgat-caaataacttaaa-aaccaatctattataaacctcaaacttaaaggaccca 135  Q
    |||| ||||||||||||||||||||||  ||||| |||||||  |||||| |||||  || ||| | ||| |||||||||||||||||||||||    
T  47573784 caatatgttacaaacctcaaacttaaaagacttatgtgtgataaaaataatttaaaggactaatatgttacaaacctcaaacttaaaggaccca 47573691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 50332690 - 50332771
Alignment:
Q  53 acaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaa-accaatctattataaacctcaaacttaaaggac 132  Q
    ||||||||||||||||||| ||||| |||| | | ||||||||||||| | |||| ||||| |||| |||||||||||||||    
T  50332690 acaaacctcaaacttaaaggacttatgtgtaaccaaaataacttaaaagatcaatttattacaaacatcaaacttaaaggac 50332771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 25848375 - 25848287
Alignment:
Q  45 aatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaagga 131  Q
    ||||| ||||||||||||||||||||| ||||  |||||| | ||||||||||||  | |||| ||||| ||| |||||||||||||||    
T  25848375 aatctattacaaacctcaaacttaaaggacttgtgtgtgaccaaaataacttaaaggatcaatttattacaaatctcaaacttaaagga 25848287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 39714614 - 39714694
Alignment:
Q  51 ttacaaacctcaaacttaaa-gaacttacgtgtgatcaaa-taacttaaaaaccaatctattataaacctcaaacttaaag 129  Q
    |||||||||||||||||||| | | ||| |||||| |||| ||||||||| | |||||| ||| |||||||||||||||||    
T  39714614 ttacaaacctcaaacttaaaaggatttatgtgtgaccaaaataacttaaacatcaatctgttaaaaacctcaaacttaaag 39714694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 39714638 - 39714694
Alignment:
Q  16 tttatgtgtgactgaaataacttaaa-accaatctgttacaaacctcaaacttaaag 71  Q
    ||||||||||||  |||||||||||| | |||||||||| |||||||||||||||||    
T  39714638 tttatgtgtgaccaaaataacttaaacatcaatctgttaaaaacctcaaacttaaag 39714694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 40286353 - 40286282
Alignment:
Q  20 tgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa 89  Q
    ||||||||  ||||||||||||  | |||| ||||| ||||||||||||||||| ||||| |||||||||||    
T  40286353 tgtgtgaccaaaataacttaaaggaacaatatgttataaacctcaaacttaaaggacttatgtgtgatcaaa 40286282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 7607777 - 7607824
Alignment:
Q  87 aaataacttaaaaaccaatctattataaacctcaaacttaaaggaccc 134  Q
    |||||||||||||| | | ||||||||||| |||||||||||||||||    
T  7607777 aaataacttaaaaaaccaactattataaacttcaaacttaaaggaccc 7607824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 36375049 - 36375128
Alignment:
Q  44 caatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaaaccaatctattataaacctcaaa 122  Q
    |||||| ||| ||| |||||||||||| |||||| |  |||||||| ||||||||||| |||||| ||| ||||||||||    
T  36375049 caatctattataaatctcaaacttaaaaaacttatgcatgatcaaaataacttaaaaaacaatctgttacaaacctcaaa 36375128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 36667299 - 36667361
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaactta 77  Q
    |||||||||||  ||||||||||||  || |||||||||||||||| |||||||||| |||||    
T  36667299 ttatgtgtgaccaaaataacttaaaggacaaatctgttacaaaccttaaacttaaaggactta 36667361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 46337586 - 46337499
Alignment:
Q  49 tgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaaggaccc 134  Q
    |||||||||| |||||||||||| ||||| |||||| | |||||| ||||| || |||| | ||| |||||||||||||||| |||||    
T  46337586 tgttacaaacttcaaacttaaaggacttatgtgtgaccaaaataatttaaagaatcaatatgttacaaacctcaaacttaaatgaccc 46337499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 49364461 - 49364552
Alignment:
Q  44 caatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataactt-aaaaaccaatctattataaacctcaaacttaaaggacc 133  Q
    |||||| ||||||| |||||||| |||| | ||| |||||||| |||||| || ||||| ||||||||||||||| ||||| ||||| ||||    
T  49364461 caatctattacaaaactcaaactcaaaggatttaagtgtgatcaaaataatttaaaaaatcaatctattataaacttcaaatttaaaagacc 49364552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 130
Target Start/End: Original strand, 5442690 - 5442720
Alignment:
Q  100 accaatctattataaacctcaaacttaaagg 130  Q
    |||||||||||||||||||||||||||||||    
T  5442690 accaatctattataaacctcaaacttaaagg 5442720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 14964947 - 14964887
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaactt 76  Q
    |||||||||||  ||||||||||||  |||||||||||||||| ||||||||||||| ||||    
T  14964947 ttatgtgtgaccaaaataacttaaatgaccaatctgttacaaa-ctcaaacttaaaggactt 14964887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 40286454 - 40286525
Alignment:
Q  61 caaacttaaagaacttacgtgtga-tcaaataacttaaaa-accaatctattataaacctcaaacttaaaggac 132  Q
    |||||||||||||||||  ||||| | |||||||| |||| |||||||| ||| ||||||||||||||||||||    
T  40286454 caaacttaaagaactta--tgtgactaaaataactcaaaagaccaatctgttacaaacctcaaacttaaaggac 40286525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Original strand, 54343525 - 54343578
Alignment:
Q  16 tttatgtgtgactgaaataacttaaaaccaatctgttacaaacctcaaacttaaa 70  Q
    ||||||||| ||| ||||||||||||| |||||| ||||||| ||||||||||||    
T  54343525 tttatgtgtaacttaaataacttaaaatcaatctcttacaaa-ctcaaacttaaa 54343578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 26724289 - 26724345
Alignment:
Q  17 ttatgtgtgactgaaataacttaa--aaccaatctgttacaaacctcaaacttaaag 71  Q
    |||||||||||  |||||||||||  || |||||| |||||||||||||||||||||    
T  26724289 ttatgtgtgacgaaaataacttaaagaatcaatctattacaaacctcaaacttaaag 26724345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 71
Target Start/End: Original strand, 47069775 - 47069804
Alignment:
Q  42 accaatctgttacaaacctcaaacttaaag 71  Q
    ||||||||||||||||||||||||||||||    
T  47069775 accaatctgttacaaacctcaaacttaaag 47069804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 47891214 - 47891118
Alignment:
Q  30 aaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaa-accaatctattataaacctcaaa 122  Q
    ||||||||||||  | ||||||| |||||||||||||||||||  ||||| |||||| | |||||| |||||| | |||||| ||| ||||||||||    
T  47891214 aaataacttaaaggatcaatctggtacaaacctcaaacttaaatgacttaggtgtgaccaaaataatttaaaagatcaatctgttacaaacctcaaa 47891118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 14964882 - 14964854
Alignment:
Q  42 accaatctgttacaaacctcaaacttaaa 70  Q
    |||||||||||||||||||||||||||||    
T  14964882 accaatctgttacaaacctcaaacttaaa 14964854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 45131484 - 45131441
Alignment:
Q  30 aaataacttaaa--accaatctgttacaaacctcaaacttaaag 71  Q
    ||||||||||||  | ||||||||||||||||||||||||||||    
T  45131484 aaataacttaaatgatcaatctgttacaaacctcaaacttaaag 45131441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 21598550 - 21598442
Alignment:
Q  30 aaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaactt 125  Q
    ||||||||||||  |||||||||||||||||||||||||||||| ||||| |||  | | ||||||||||||  |||||||| |||||||||||||||||    
T  21598550 aaataacttaaaggaccaatctgttacaaacctcaaacttaaaggacttatgtgcaaccaaaataacttaaaggaccaatctgttataaacctcaaactt 21598451  T
Q  126 aaaggaccc 134  Q
    |||||||||    
T  21598450 aaaggaccc 21598442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 21598665 - 21598786
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattat 112  Q
    |||||||||||  ||||||||||||  |||||| ||||||||||| ||||||||||| ||||| ||| || |||| |||||||||  |||||||| |||     
T  21598665 ttatgtgtgaccaaaataacttaaaggaccaatatgttacaaaccacaaacttaaaggacttatgtgagaacaaaataacttaaaggaccaatctgttac 21598764  T
Q  113 aaacctcaaacttaaaggaccc 134  Q
    ||||||||||||||||||||||    
T  21598765 aaacctcaaacttaaaggaccc 21598786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 130
Target Start/End: Original strand, 35050712 - 35050802
Alignment:
Q  42 accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaagg 130  Q
    |||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||  |||||||| ||| |||||| |||||||||||    
T  35050712 accaatctgttacaaatctcaaacttaaagaacttatgtgtgatcgaaataacttaaaggaccaatctgttacaaaccttaaacttaaagg 35050802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 13273183 - 13273066
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaaccaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaa-accaatctattataa 114  Q
    ||||||| |||  |||||||| |||| |||||||||| ||||||||||||||||||||||| || ||| | |||||| | |||| |||||||||||| ||    
T  13273183 ttatgtgggaccaaaataact-aaaatcaatctgttataaacctcaaacttaaagaacttatgtatgaccaaaataattcaaaagaccaatctattacaa 13273085  T
Q  115 acctcaaacttaaaggacc 133  Q
    || ||||||||||||||||    
T  13273084 acatcaaacttaaaggacc 13273066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 10356481 - 10356601
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaa--ccaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattat 112  Q
    ||||||||| |  |||||||||||||  ||||||||||||||| ||||||||||||| ||||| |||| | | ||||||| ||||  |||||||| |||     
T  10356481 ttatgtgtggcaaaaataacttaaaagaccaatctgttacaaatctcaaacttaaaggacttatgtgttaccaaaataacctaaaggaccaatctgttac 10356580  T
Q  113 aaacctcaaacttaaaggacc 133  Q
    |||| ||||||||||||||||    
T  10356581 aaacgtcaaacttaaaggacc 10356601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 133
Target Start/End: Complemental strand, 17136962 - 17136842
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattat 112  Q
    |||||||||||  ||||||||||||  |  ||||||||||||||||||||||||||  ||||| ||| || | ||||||||||||  || |||||||||     
T  17136962 ttatgtgtgaccaaaataacttaaagaattaatctgttacaaacctcaaacttaaatgacttatgtgagaccaaaataacttaaaggactaatctattac 17136863  T
Q  113 aaacctcaaacttaaaggacc 133  Q
    |||||||||| ||||||||||    
T  17136862 aaacctcaaatttaaaggacc 17136842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 35225502 - 35225395
Alignment:
Q  31 aataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaactta 126  Q
    |||||||||||  ||||||||||||||||||| |||||||||| | ||| || ||| | ||||||||||||  |||||| | ||| ||||||||||||||    
T  35225502 aataacttaaaggaccaatctgttacaaaccttaaacttaaaggatttatgtatgaccaaaataacttaaaggaccaatttgttacaaacctcaaactta 35225403  T
Q  127 aaggaccc 134  Q
    ||||||||    
T  35225402 aaggaccc 35225395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 144
Target Start/End: Complemental strand, 24059783 - 24059654
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaaaccaatctattata 113  Q
    |||||||||||  |||||| |||||  | |||||||||| ||||||||||||||||| ||||| ||| |  |||| |||||| |||| |||| | ||| |    
T  24059783 ttatgtgtgaccaaaataatttaaatgatcaatctgttataaacctcaaacttaaaggacttatgtggggccaaagtaactt-aaaatcaatatgttaca 24059685  T
Q  114 aacctcaaacttaaaggacccaagtgtaatt 144  Q
    |||||||||||||||||||||  ||||||||    
T  24059684 aacctcaaacttaaaggaccctggtgtaatt 24059654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 10356375 - 10356258
Alignment:
Q  21 gtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaac 116  Q
    |||||||  ||||||||||||  ||||||||||||||||  |||||||||||| ||||| |||||| | |||||| |||||  || ||| | ||| ||||    
T  10356375 gtgtgaccaaaataacttaaagaaccaatctgttacaaatatcaaacttaaaggacttatgtgtgaccaaaataatttaaaggactaatttgttacaaac 10356276  T
Q  117 ctcaaacttaaaggaccc 134  Q
    ||||||||||||||||||    
T  10356275 ctcaaacttaaaggaccc 10356258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 130
Target Start/End: Original strand, 35050813 - 35050917
Alignment:
Q  30 aaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaactt 125  Q
    ||||||||||||  ||||||||||||||||| | |||||||||| ||||| | |||| | ||||||||||||  | |||| ||||| |||||||||||||    
T  35050813 aaataacttaaaggaccaatctgttacaaactttaaacttaaaggacttatgcgtgacctaaataacttaaaggatcaatttattacaaacctcaaactt 35050912  T
Q  126 aaagg 130  Q
    |||||    
T  35050913 aaagg 35050917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 10356412 - 10356320
Alignment:
Q  42 accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaaggac 132  Q
    |||||||| |||||||  |||||||||||| ||||| |||||| | |||||||||||| ||||||||| ||| |||  |||||||||||||||    
T  10356412 accaatctattacaaatatcaaacttaaaggacttaagtgtgaccaaaataacttaaagaaccaatctgttacaaatatcaaacttaaaggac 10356320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 35225530 - 35225458
Alignment:
Q  61 caaacttaaagaacttacgtgtgatca-aataacttaaa-aaccaatctattataaacctcaaacttaaagga 131  Q
    ||||||||||||||||| ||||||||| |||||||||||  |||||||| ||| |||||| ||||||||||||    
T  35225530 caaacttaaagaacttatgtgtgatcagaataacttaaaggaccaatctgttacaaaccttaaacttaaagga 35225458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 9982759 - 9982714
Alignment:
Q  44 caatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa 89  Q
    |||||||||||||| ||||||||||||| ||||| |||||||||||    
T  9982759 caatctgttacaaaactcaaacttaaaggacttatgtgtgatcaaa 9982714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 17342660 - 17342776
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattat 112  Q
    ||||||||||| |||||||||||||  |||||  ||||||||||||||||||||||  ||||| || | | | ||||||||||||  |||||  | |||     
T  17342660 ttatgtgtgaccgaaataacttaaaggaccaacatgttacaaacctcaaacttaaaagacttatgtattaccaaaataacttaaaggaccaacatgttac 17342759  T
Q  113 aaacctcaaacttaaag 129  Q
    |||||||||||||||||    
T  17342760 aaacctcaaacttaaag 17342776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 35050745 - 35050801
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaag 71  Q
    ||||||||||  |||||||||||||  ||||||||||||||||||| ||||||||||    
T  35050745 ttatgtgtgatcgaaataacttaaaggaccaatctgttacaaaccttaaacttaaag 35050801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 364117 - 364045
Alignment:
Q  61 caaacttaaagaacttacgtgtgatcaaat-aacttaaaaaccaatctattataaacctcaaacttaaaggac 132  Q
    |||||||||||||||||  ||||| ||||  |||||||||| |||||| ||| |||||| |||||||||||||    
T  364117 caaacttaaagaacttatttgtgaccaaaacaacttaaaaatcaatctgttacaaaccttaaacttaaaggac 364045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 35225457 - 35225400
Alignment:
Q  16 tttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaag 71  Q
    ||||||| ||||  ||||||||||||  |||||| |||||||||||||||||||||||    
T  35225457 tttatgtatgaccaaaataacttaaaggaccaatttgttacaaacctcaaacttaaag 35225400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 3853538 - 3853493
Alignment:
Q  90 taacttaaaaaccaatctattataaacctcaaacttaaaggaccca 135  Q
    ||||||||||||| |||||||| ||| ||||||||||||| |||||    
T  3853538 taacttaaaaacctatctattacaaatctcaaacttaaagaaccca 3853493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 3895704 - 3895823
Alignment:
Q  16 tttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaataacttaaaaacc-aatctattat 112  Q
    ||||||||||| | ||||||||||||  || ||| |||||||||  | | | |||||  ||||| |||||| ||| |||||||||||   |||||||||     
T  3895704 tttatgtgtgattaaaataacttaaatgactaatttgttacaaattttatatttaaaagacttatgtgtgaccaa-taacttaaaaaattaatctattac 3895802  T
Q  113 aaacctcaaacttaaaggacc 133  Q
    |||||||||||||||||||||    
T  3895803 aaacctcaaacttaaaggacc 3895823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 17137035 - 17137095
Alignment:
Q  19 atgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaactta 77  Q
    ||||||||||  |||||||||||  |||||||| |||||||| ||| ||||||||||||||    
T  17137035 atgtgtgactagaataacttaaatgaccaatctattacaaacttcacacttaaagaactta 17137095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 24059797 - 24059724
Alignment:
Q  61 caaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaaggac 132  Q
    ||||||||||| ||||| |||||| |||| ||| |||||  | |||||| ||||||||||||||||||||||||    
T  24059797 caaacttaaaggacttatgtgtgaccaaaataatttaaatgatcaatctgttataaacctcaaacttaaaggac 24059724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 161522 - 161401
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattat 112  Q
    |||||||||||  |||||| |||||  |||||||||||||||| ||||||||||||| ||||| |||||| | |||||| |||||  |||||||| |||     
T  161522 ttatgtgtgacaaaaataagttaaaggaccaatctgttacaaatctcaaacttaaaggacttatgtgtgaccaaaataagttaaaggaccaatctgttac 161423  T
Q  113 aaacctcaaacttaaaggaccc 134  Q
    ||||||||||||||||||||||    
T  161422 aaacctcaaacttaaaggaccc 161401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 161624 - 161743
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattat 112  Q
    |||||||||||  ||||||| ||||  ||||||||||||||||  ||||| |||||| ||||| |||||| | ||||||||||||  | ||||||||||     
T  161624 ttatgtgtgaccaaaataacctaaaggaccaatctgttacaaatatcaaatttaaaggacttatgtgtgaccaaaataacttaaaggatcaatctattac 161723  T
Q  113 aaacctcaaacttaaaggac 132  Q
    |||| |||||||||||||||    
T  161724 aaacatcaaacttaaaggac 161743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 12278 - 12383
Alignment:
Q  30 aaataacttaaa-accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaaaccaatctattataaacctcaaacttaa 127  Q
    |||||| ||||| ||||||||||||||||||||||||||||   |||||  ||||||| ||||||||| |||| |||||||||| |||||||||||||||    
T  12278 aaataagttaaagaccaatctgttacaaacctcaaacttaattgacttatatgtgatcaaaataactt-aaaatcaatctattacaaacctcaaacttaa 12376  T
Q  128 aggaccc 134  Q
    | |||||    
T  12377 atgaccc 12383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 12163 - 12048
Alignment:
Q  20 tgtgtgactgaaataacttaaa-accaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaaaaccaatctattataaacc 117  Q
    ||||||||  |||||||||||  |||||| ||||||||| |||||||||||||    || |||||| | |||||||||  |||||||| ||||| |||||    
T  12163 tgtgtgacaaaaataacttaaggaccaatttgttacaaatctcaaacttaaagggtatatgtgtgaccaaaataactt-gaaaccaatttattacaaacc 12065  T
Q  118 tcaaacttaaaggaccc 134  Q
    |||||||||||||||||    
T  12064 tcaaacttaaaggaccc 12048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 12106 - 12053
Alignment:
Q  18 tatgtgtgactgaaataacttaaaaccaatctgttacaaacctcaaacttaaag 71  Q
    ||||||||||  ||||||||| |||||||| | |||||||||||||||||||||    
T  12106 tatgtgtgaccaaaataacttgaaaccaatttattacaaacctcaaacttaaag 12053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 134
Target Start/End: Original strand, 2430 - 2522
Alignment:
Q  45 aatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa--accaatctattataaacctcaaacttaaaggaccc 134  Q
    ||||||||||||||| ||||||||||  ||||| |||||| |||| ||||||||||  |||||||||||| ||||||||||||||||| ||||    
T  2430 aatctgttacaaaccacaaacttaaatgacttatgtgtgaacaaaataacttaaaaggaccaatctattacaaacctcaaacttaaagaaccc 2522  T

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Target: scaffold0578; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 2460 - 2520
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaa---ccaatctgttacaaacctcaaacttaaagaac 74  Q
    ||||||||||   |||||||||||||   ||||||| ||||||||||||||||||||||||    
T  2460 ttatgtgtgaacaaaataacttaaaaggaccaatctattacaaacctcaaacttaaagaac 2520  T

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Target: scaffold0157 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 21638 - 21519
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattat 112  Q
    ||||||||||| ||||||| |||||  |  | ||||||||||| ||||||||||||| ||||| ||||||| ||| |||||||||  | ||||||||||     
T  21638 ttatgtgtgaccgaaataatttaaaggattagtctgttacaaatctcaaacttaaaggacttatgtgtgattaaaataacttaaatgatcaatctattac 21539  T
Q  113 aaacctcaaacttaaaggac 132  Q
    ||||||||||||||||||||    
T  21538 aaacctcaaacttaaaggac 21519  T

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Target: scaffold0157; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 21738 - 21861
Alignment:
Q  16 tttatgtgtgactgaaataacttaaaac--caatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa--accaatctatt 110  Q
    ||||||||||||  |||||||||||||   |||| | || ||||||| |||||||||  ||||| ||||||  ||| ||||||||||  |||||||||||    
T  21738 tttatgtgtgaccaaaataacttaaaagatcaatatattgcaaaccttaaacttaaaagacttatgtgtgacaaaaataacttaaaaggaccaatctatt 21837  T
Q  111 ataaacctcaaacttaaaggaccc 134  Q
    | |||||||||| |||| ||||||    
T  21838 acaaacctcaaatttaatggaccc 21861  T

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Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 40892519 - 40892638
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaa-ccaatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattata 113  Q
    ||||||||||  |||||||||||||  |||||||||||||||||||||| |||||| ||||| |||||| | ||||||||||||  | |||| | ||| |    
T  40892519 ttatgtgtgatcgaaataacttaaagtccaatctgttacaaacctcaaatttaaaggacttatgtgtgaccaaaataacttaaatgatcaatatgttaca 40892618  T
Q  114 aacctcaaacttaaaggacc 133  Q
    ||||||||||| ||||||||    
T  40892619 aacctcaaactcaaaggacc 40892638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 26879633 - 26879740
Alignment:
Q  30 aaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaactt 125  Q
    ||||||||||||  | ||||||||| ||||| |||||||||||  ||||| ||||||| ||| |||||||||  |||||||| ||| |||||||||||||    
T  26879633 aaataacttaaaggatcaatctgtttcaaacttcaaacttaaaagacttatgtgtgataaaaataacttaaatgaccaatctgttacaaacctcaaactt 26879732  T
Q  126 aaaggacc 133  Q
    ||||||||    
T  26879733 aaaggacc 26879740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 134
Target Start/End: Complemental strand, 33650513 - 33650395
Alignment:
Q  21 gtgtgactgaaataacttaaaa---ccaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaa 115  Q
    |||||||  |||||||||||||   ||||| ||||||| ||| ||||||||||  ||||| ||| || |||| |||||||||  |||||||| |||||||    
T  33650513 gtgtgaccaaaataacttaaaaggaccaatatgttacataccacaaacttaaatgacttatgtgggaacaaaataacttaaaggaccaatctgttataaa 33650414  T
Q  116 cctcaaacttaaaggaccc 134  Q
    |||||||||||||||||||    
T  33650413 cctcaaacttaaaggaccc 33650395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 52913258 - 52913173
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgtt-acaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa 98  Q
    ||||||||||||  |||||||||||  ||||||||||| ||||||||||||||||||| ||||| |||||| | ||||||||||||    
T  52913258 ttatgtgtgactagaataacttaaaggaccaatctgtttacaaacctcaaacttaaaggacttatgtgtgaccaaaataacttaaa 52913173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 7490018 - 7489902
Alignment:
Q  16 tttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtga-tcaaataacttaaa-aaccaatctatta 111  Q
    ||||||||||||  ||||||||||||  |  ||||||||||||||||||||||||||| ||||| |||||| | |||||| |||||  | |||||| | |    
T  7490018 tttatgtgtgaccaaaataacttaaatgattaatctgttacaaacctcaaacttaaaggacttatgtgtgactaaaataatttaaatgatcaatctctca 7489919  T
Q  112 taaacctcaaacttaaa 128  Q
     ||||||||||||||||    
T  7489918 caaacctcaaacttaaa 7489902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 61 - 128
Target Start/End: Complemental strand, 1173142 - 1173075
Alignment:
Q  61 caaacttaaagaacttacgtgtgatcaaa-taacttaaaaaccaatctattataaacctcaaacttaaa 128  Q
    |||||||||||| |||| |||||| |||| |||||||||||| ||||| ||||||||||||||||||||    
T  1173142 caaacttaaaga-cttatgtgtgaccaaaataacttaaaaactaatctgttataaacctcaaacttaaa 1173075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 18608692 - 18608622
Alignment:
Q  21 gtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa 89  Q
    |||||||  ||||||||||||  | |||||||||||||||||||||||||||| ||||| |||| ||||||    
T  18608692 gtgtgaccaaaataacttaaagaatcaatctgttacaaacctcaaacttaaaggacttatgtgttatcaaa 18608622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 7490048 - 7489958
Alignment:
Q  44 caatctgttacaaacctcaaacttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaaggac 132  Q
    |||||| ||||||||||||||||||||| | ||| |||||| | ||||||||||||  |  ||||| ||| ||||||||||||||||||||    
T  7490048 caatctattacaaacctcaaacttaaaggatttatgtgtgaccaaaataacttaaatgattaatctgttacaaacctcaaacttaaaggac 7489958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 50727593 - 50727722
Alignment:
Q  20 tgtgtgactgaaataacttaaaa--ccaatctgttacaaacctcaaacttaaa-gaacttacgtgtga-tcaaataacttaaaa-accaatctattataa 114  Q
    ||||||||| |||||||||||||  | |||||||||||||||| ||| ||||| | ||||| ||| || | ||||||||||||  || ||| | ||| ||    
T  50727593 tgtgtgactaaaataacttaaaagacaaatctgttacaaaccttaaatttaaaaggacttatgtgcgactaaaataacttaaatgacaaatttgttagaa 50727692  T
Q  115 acctcaaacttaaaggacccaagtgtaatt 144  Q
    ||||||||||||||||| || |||||||||    
T  50727693 acctcaaacttaaaggatcccagtgtaatt 50727722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 18608710 - 18608637
Alignment:
Q  61 caaacttaaagaacttacgtgtgatcaaa-taacttaaa-aaccaatctattataaacctcaaacttaaaggac 132  Q
    ||||||||||| ||||| |||||| |||| ||||||||| || |||||| ||| ||||||||||||||||||||    
T  18608710 caaacttaaaggacttaagtgtgaccaaaataacttaaagaatcaatctgttacaaacctcaaacttaaaggac 18608637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 26879680 - 26879736
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaag 71  Q
    ||||||||||   ||||||||||||  ||||||||||||||||||||||||||||||    
T  26879680 ttatgtgtgataaaaataacttaaatgaccaatctgttacaaacctcaaacttaaag 26879736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 33650620 - 33650740
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattat 112  Q
    ||||||| |||  ||||||||||||  |||||||| ||||||||| |||| |||||| ||||| ||| || |||| |||||||||  | |||||| |||     
T  33650620 ttatgtgagaccaaaataacttaaaggaccaatctcttacaaaccacaaagttaaaggacttatgtgggaacaaagtaacttaaaggatcaatctgttac 33650719  T
Q  113 aaacctcaaacttaaaggacc 133  Q
     ||||||||||||||||||||    
T  33650720 gaacctcaaacttaaaggacc 33650740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 2633542 - 2633609
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgt 82  Q
    |||| ||||||  ||||||||||||  |||||||||| ||||||||||||||||||| ||||| ||||    
T  2633542 ttatatgtgaccaaaataacttaaatgaccaatctgtcacaaacctcaaacttaaaggacttatgtgt 2633609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 18608616 - 18608572
Alignment:
Q  45 aatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa 89  Q
    ||||||||||||||||||||||||||| |||||  ||||||||||    
T  18608616 aatctgttacaaacctcaaacttaaaggacttatatgtgatcaaa 18608572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 2633375 - 2633437
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaactta 77  Q
    ||||| |||||  ||||||||||||  || ||| |||||||||||||||||||||||||||||    
T  2633375 ttatgcgtgacaaaaataacttaaagaacaaatatgttacaaacctcaaacttaaagaactta 2633437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 1173129 - 1173075
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaacc-aatctgttacaaacctcaaacttaaa 70  Q
    |||||||||||  ||||||||||||| | ||||||||| ||||||||||||||||    
T  1173129 ttatgtgtgaccaaaataacttaaaaactaatctgttataaacctcaaacttaaa 1173075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 6314350 - 6314296
Alignment:
Q  17 ttatgtgtgactgaaataacttaaaaccaatctgttacaaacctcaaacttaaag 71  Q
    ||||||||||   |||||| |||| || |||||||||||||||||||||||||||    
T  6314350 ttatgtgtgaaaaaaataatttaagacaaatctgttacaaacctcaaacttaaag 6314296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 18204992 - 18205049
Alignment:
Q  18 tatgtgtgactgaaataacttaaaaccaatctgttacaaacctcaaacttaaagaact 75  Q
    ||||| ||||| ||||||||||||| |||||| ||||||| || ||||| ||||||||    
T  18204992 tatgtatgactaaaataacttaaaaacaatctattacaaatcttaaactgaaagaact 18205049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 52913090 - 52913034
Alignment:
Q  16 tttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaa 70  Q
    ||||||||||||  ||||||||||||  || |||||||||||||| |||||||||||    
T  52913090 tttatgtgtgaccaaaataacttaaaggactaatctgttacaaacttcaaacttaaa 52913034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 2633264 - 2633189
Alignment:
Q  16 tttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa 89  Q
    ||||||||| ||  ||||||||||||  | |||||| ||||||| ||||||||||||  |||||||||||| ||||    
T  2633264 tttatgtgtaaccaaaataacttaaatgaacaatctattacaaatctcaaacttaaaagacttacgtgtgaacaaa 2633189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 34173363 - 34173320
Alignment:
Q  30 aaataacttaaa--accaatctgttacaaacctcaaacttaaag 71  Q
    ||||||||||||  ||||||||||||||||| ||||||||||||    
T  34173363 aaataacttaaaggaccaatctgttacaaacatcaaacttaaag 34173320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 52913151 - 52913028
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgtt-acaaacctcaaactt-aaagaacttacgtgtgatc-aaataacttaaa-aaccaatctatt 110  Q
    |||||||||||   |||||||||||  ||||||||||| ||||||||||||||| |||| | ||| |||||| | ||||||||||||  || ||||| ||    
T  52913151 ttatgtgtgaccagaataacttaaatgaccaatctgtttacaaacctcaaacttaaaaggatttatgtgtgaccaaaataacttaaaggactaatctgtt 52913052  T
Q  111 ataaacctcaaacttaaaggaccc 134  Q
    | |||| ||||||||||| |||||    
T  52913051 acaaacttcaaacttaaaagaccc 52913028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 2597 - 2667
Alignment:
Q  61 caaacttaaagaacttacgtgtgatcaaa-taacttaaaaaccaatctattataaacctcaaacttaaagg 130  Q
    ||||||||||||||||| |||| || ||| ||||||||| | |||||| ||||||||||||||||||||||    
T  2597 caaacttaaagaacttatgtgttataaaagtaacttaaataacaatctgttataaacctcaaacttaaagg 2667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 1154 - 1273
Alignment:
Q  17 ttatgtgtgactgaaataacttaaa--accaatctgttacaaacctcaaacttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattat 112  Q
    |||||||||||  ||||||| ||||  ||||||| ||||||||  |||||||||||  ||||| |||||| |||| |||||||||  |||||||| |||     
T  1154 ttatgtgtgaccaaaataacctaaaggaccaatcagttacaaatatcaaacttaaatgacttatgtgtgaccaaaataacttaaaggaccaatctgttac 1253  T
Q  113 aaacctcaaacttaaaggac 132  Q
    |||| |||||||||||||||    
T  1254 aaacgtcaaacttaaaggac 1273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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