View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12558_high_19 (Length: 250)
Name: NF12558_high_19
Description: NF12558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12558_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 52249607 - 52249834
Alignment:
| Q |
9 |
ttttattacaaaaggagtacaacggaaagttatctcgggttttatcaatcattttcttaaaaaccacgtttcaaaccactttttatggctattaacgacc |
108 |
Q |
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| T |
52249607 |
ttttattacgaaaggagtacaacggaaagttatctcgggttttatcaatcattttcttaaaaaccacgtttcaaatcactttttatggctattaacgacc |
52249706 |
T |
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| Q |
109 |
atcgtttaacaattgacaaatataataatacagtatcatatcgattaaaaagttcaccgtttagnnnnnnnttgtcgattcagttagtgtttttgactat |
208 |
Q |
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| T |
52249707 |
atcgtttaacaattgacaaatataataatacagtatcatatcgattaaaaagttcaccgtttag-taaaaattgtcgattcagttagtgtttttgactat |
52249805 |
T |
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| Q |
209 |
ttttgtatagattgcagatgtgtggtcct |
237 |
Q |
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| T |
52249806 |
ttttgtatagattgcagatgtgtgttcct |
52249834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 41120041 - 41120275
Alignment:
| Q |
1 |
tcctgagattttattacaaaaggagtacaacggaaagttatctcgggttttatcaatcattttc--ttaaaaaccacgtttcaaaccactttttatggct |
98 |
Q |
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| T |
41120041 |
tcctgaggttctgttacaaaaggagtacgacagaaaggtgcctgagattttctctatcattttcgattaaaaactacgtttcaaactacttcttatggct |
41120140 |
T |
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| Q |
99 |
attaacgaccatcgtttaacaattgacaaata-taataatacagtatcatatcgattaaaaagttcaccgtttagnnnnnnnttgtcgattcagttagtg |
197 |
Q |
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| T |
41120141 |
-taaacaaccatggtttaacaattgacaaatagtaatagtacagtctcgtattgattaaaaagttcacggtttagtaaaaaa-tgtcgattcagttagtg |
41120238 |
T |
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| Q |
198 |
tttttgactatttttgtatagattgcagatgtgtggtcct |
237 |
Q |
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| T |
41120239 |
tttttggc---tcttgtgtagattgcagatatgtggtcct |
41120275 |
T |
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