View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12558_high_2 (Length: 655)
Name: NF12558_high_2
Description: NF12558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12558_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 38 - 650
Target Start/End: Original strand, 12798134 - 12798723
Alignment:
| Q |
38 |
gcaattgtggaattcctaccttaaatccaaagcaagcgggaaatctaatcatatttcatatatgtcaagtgaaattggtctaaaccaataccacaaatcc |
137 |
Q |
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| T |
12798134 |
gcaattgtagaattcctaccttaaatccaaagcaagtggaaaatctaatcatatttcatatatgtccagtgaaattggtctaaaccaacaccacaa---- |
12798229 |
T |
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| Q |
138 |
ccacaatattgaactcatacattttaagtgtaaaaaataaggaatctagagttcaaattaaaccacagtctatacgtattattgtccttgaaactactaa |
237 |
Q |
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| T |
12798230 |
------tattgaactcata-------------aaaaataaggaacctagagttcaaataaaaccacaatctctgcatattattgtccttaaaactactaa |
12798310 |
T |
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| Q |
238 |
ttaagttttacttagaagacccaacaccatagtaaattagaaactacagggtgacgcacgttttccacccaatagccgtatcacaggttgctagcaacag |
337 |
Q |
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| T |
12798311 |
ttaagttttacttagaagacccaacgccatagaaatttagaaactataggatgaggcacgttttccatccaatatctgtatcatagctttctagtaacaa |
12798410 |
T |
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| Q |
338 |
ctactaaactaatctgctgtacagccagagtattcttaattcttatatttgtcaccctactgtgatccatcattgaaaatgtattcatacactaaagaat |
437 |
Q |
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| T |
12798411 |
ctactaaactcatctgctggacagctagagtattcttaattcttatatttgtcaccctactgtgatccatcattgaaaatgtattcatacactaaagaat |
12798510 |
T |
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| Q |
438 |
aaataatgtggtcaatgttagcaaggtccaaactccttatatacaattaatttacaacacctaattgttagctagcatttgtttttagtgaggttgttga |
537 |
Q |
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| T |
12798511 |
aaataatgtggtcaatgttagcaaggtccaaactccttatatacaattaatttacaacacctaattgttagctagcatttgtttttagtgaggttgttga |
12798610 |
T |
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| Q |
538 |
tgattctaccttgatccttgacaaataaaaatatcatgtattgcatgtaatcaatcaagagggtttttgttttatttcaatgaacgaaatcttagtagca |
637 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12798611 |
tgattctaccttgatccttgacaaataaaaatatcatgtattgcgtgtaatcaatcaagagggtttttgttttatttcaatgaacgaaatcttagtagca |
12798710 |
T |
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