View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12558_high_22 (Length: 233)
Name: NF12558_high_22
Description: NF12558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12558_high_22 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 6 - 233
Target Start/End: Complemental strand, 36673776 - 36673549
Alignment:
| Q |
6 |
caaagggtcaacattgcacttggaatagcaagagggttatcatggctacatcatacatgtgatttgggcatagtgcattttagcatatgttcagaatgca |
105 |
Q |
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| T |
36673776 |
caaagggtcaacattgcacttggaatagcaagagggttatcatggctgcatcatagctgtgatttgggcatagtgcattttaatatatgttcagaatgca |
36673677 |
T |
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| Q |
106 |
tattgctagatgagaattttgaacccaaaatatccaattttggagagggcaaatttatgaatcccaacattgaagatcatcatggcatgatgtttatggt |
205 |
Q |
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| T |
36673676 |
tattgctagatgagaattttgaacccaaaatatccaattttggagaggccaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggt |
36673577 |
T |
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| Q |
206 |
ggacgacgggaagaaggatgtctacgac |
233 |
Q |
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| T |
36673576 |
ggacgacgggaagaaggatgtctacgac |
36673549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 36676528 - 36676304
Alignment:
| Q |
9 |
agggtcaacattgcacttggaatagcaagagggttatcatggctacatcatacatgtgatttgggcatagtgcattttagcatatgttcagaatgcatat |
108 |
Q |
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| T |
36676528 |
agggtcaacattgcatttggaatagcaagagggttatcatggctgcatcatacatgcgatttgggcatagtgcattttagcatatgttcagaatgcatat |
36676429 |
T |
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| Q |
109 |
tgctagatgagaattttgaacccaaaatatccaattttggagagggcaaatttatgaatcccaacattgaagatcatcatggcatgatgtttatggtgga |
208 |
Q |
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| T |
36676428 |
tgctagatgagaactttgaaccaaaaatatccaattttggagaggccaaatttatgaatcccaacattgaagatcatcttggcatgatgtttaaggtgaa |
36676329 |
T |
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| Q |
209 |
cgacgggaagaaggatgtctacgac |
233 |
Q |
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| T |
36676328 |
cgacgggaagaaggatgtctacgac |
36676304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 9 - 233
Target Start/End: Complemental strand, 36684201 - 36683977
Alignment:
| Q |
9 |
agggtcaacattgcacttggaatagcaagagggttatcatggctacatcatacatgtgatttgggcatagtgcattttagcatatgttcagaatgcatat |
108 |
Q |
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| T |
36684201 |
agggtcaacattgcacttggattagcaagaggattatcatggctccatcatagctgtgatttgggcatagtgcattttaatatatattcacaatgcatat |
36684102 |
T |
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| Q |
109 |
tgctagatgagaattttgaacccaaaatatccaattttggagagggcaaatttatgaatcccaacattgaagatcatcatggcatgatgtttatggtgga |
208 |
Q |
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| T |
36684101 |
tgctagatgagaattttgaacccaaaatatccaattttgggcaggcgaaatttatgaatcccaacattgaagatcatctcagcacgatgtttaaagtgaa |
36684002 |
T |
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| Q |
209 |
cgacgggaagaaggatgtctacgac |
233 |
Q |
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| T |
36684001 |
tgacgggaagaaggatgtctacgac |
36683977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 36695862 - 36695833
Alignment:
| Q |
204 |
gtggacgacgggaagaaggatgtctacgac |
233 |
Q |
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| T |
36695862 |
gtggacgacgggaagaaggatgtctacgac |
36695833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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