View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12558_high_23 (Length: 226)
Name: NF12558_high_23
Description: NF12558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12558_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 3188974 - 3188765
Alignment:
| Q |
1 |
tttgaagcttacataatacaacaatctagaggataaaccgacaaattaaactttaatactcaaataatggaaaatctggagggaatacaacaggagaaaa |
100 |
Q |
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| T |
3188974 |
tttgaagcttacataatacaacaatctagagcataaaccgacaaatcaaactg-aatactcaaataatggaaaatctggagggaaaacaacatgagaaaa |
3188876 |
T |
|
| Q |
101 |
agatgagacatagacgtaagttgtatgtaaaagcaaattaagaaaaaggaacattatgaatactcaacatatcgaatatgatttaatatgaatttgcaag |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3188875 |
agatgagacatagacgtaagtcgtatgtaaaagcaaattaagaaaaaggaacattatgaatactcaacatatcgaatatgatttaatataaatttgcaag |
3188776 |
T |
|
| Q |
201 |
tattgagtgtt |
211 |
Q |
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||||||||||| |
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| T |
3188775 |
tattgagtgtt |
3188765 |
T |
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