View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12558_high_9 (Length: 395)

Name: NF12558_high_9
Description: NF12558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12558_high_9
NF12558_high_9
[»] chr3 (12 HSPs)
chr3 (155-378)||(30486074-30486295)
chr3 (11-141)||(30485917-30486047)
chr3 (11-143)||(30505702-30505833)
chr3 (219-287)||(30506970-30507038)
chr3 (219-287)||(30522684-30522752)
chr3 (11-105)||(30520690-30520783)
chr3 (11-62)||(30489874-30489925)
chr3 (11-62)||(30516477-30516528)
chr3 (158-196)||(30506920-30506958)
chr3 (72-138)||(30516547-30516613)
chr3 (158-196)||(30522634-30522672)
chr3 (156-197)||(30505858-30505899)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 155 - 378
Target Start/End: Original strand, 30486074 - 30486295
Alignment:
Q  155 taaagtatcatggaatcaatttgctgcttttgcatttgcactcnnnnnnnnncttcttcccccttcttttaatttgataaaaattaatagcgttcacatt 254  Q
    |||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||    
T  30486074 taaagtatcatggaatcaatttgctgcttttgcatttgcactcttttttttt-ttcttcccccttcttttaatttgataaaaattaatagcgttcacatt 30486172  T
Q  255 tttatattaatcaaaatactgaagaaagttatgcgaagatgggtatagaaaggcgtcctaagttaagttgttccgcacatgtgcaatgatagtgttaact 354  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||    
T  30486173 tttatattaatcaaaatactgaagaaagttatgcgaagat-ggtatagaaaggcgttctaagttaagttgtttcgcacatgtgcaatcatagtgttaact 30486271  T
Q  355 taagaaatgtttatgccatctctt 378  Q
    ||||||||||||||||||||||||    
T  30486272 taagaaatgtttatgccatctctt 30486295  T

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Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 141
Target Start/End: Original strand, 30485917 - 30486047
Alignment:
Q  11 cacagatgttgagttttttcttgtttcacacttctactaattccatctcacannnnnnncttatttgttatctgctggttagatttaattgttcacttgg 110  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  30485917 cacagatgttgagttttttcttgtctcacacttctactaattccatctcacatttttttcttatttgttatctgctggttagatttaattgttcacttgg 30486016  T
Q  111 atttgatatttttaatattgacataactatt 141  Q
    |||||||||| ||||||||||||||||||||    
T  30486017 atttgatattattaatattgacataactatt 30486047  T

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Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 30505702 - 30505833
Alignment:
Q  11 cacagatgttgagttttttcttgtttcacacttctactaattccatctcacannnnnnncttatttgttatctgctggttagatttaattgttcacttgg 110  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||||  ||| | ||||||||||| ||||    
T  30505702 cacagatgttgagttttttcttgtctcacacttctactaattccatctcacatttttttcttatttgttatctgctaatta-aattaattgttcatttgg 30505800  T
Q  111 atttgatatttttaatattgacataactatttg 143  Q
    || | |||||||| ||||||| |||||| ||||    
T  30505801 atgtaatatttttgatattgaaataactttttg 30505833  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 30506970 - 30507038
Alignment:
Q  219 tcttttaatttgataaaaattaatagcgttcacatttttatattaatcaaaatactgaagaaagttatg 287  Q
    ||||||||||| |||| |||||||||| ||||||||||| ||||||||||||||||||| |||||||||    
T  30506970 tcttttaatttaataataattaatagctttcacatttttctattaatcaaaatactgaataaagttatg 30507038  T

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Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 30522684 - 30522752
Alignment:
Q  219 tcttttaatttgataaaaattaatagcgttcacatttttatattaatcaaaatactgaagaaagttatg 287  Q
    ||||||||||| |||| |||||||||| ||||||||||| ||||||||||||||||||| |||||||||    
T  30522684 tcttttaatttaataataattaatagctttcacatttttttattaatcaaaatactgaataaagttatg 30522752  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 30520690 - 30520783
Alignment:
Q  11 cacagatgttgagttttttcttgtttcacacttctactaattccatctcacannnnnnncttatttgttatctgctggttagatttaattgttca 105  Q
    ||||||||||||| |||||||||| ||||  |||||||||||||||||||||       |||||||||||||| ||  ||| |||||||||||||    
T  30520690 cacagatgttgaggtttttcttgtctcaccattctactaattccatctcaca-atttttcttatttgttatctcctaattaaatttaattgttca 30520783  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 30489874 - 30489925
Alignment:
Q  11 cacagatgttgagttttttcttgtttcacacttctactaattccatctcaca 62  Q
    ||||||||||||||||||| |||| ||||  |||||||||||||||||||||    
T  30489874 cacagatgttgagtttttttttgtctcaccattctactaattccatctcaca 30489925  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 30516477 - 30516528
Alignment:
Q  11 cacagatgttgagttttttcttgtttcacacttctactaattccatctcaca 62  Q
    |||||||||||||||||| ||||| ||||| |||||||||||| ||||||||    
T  30516477 cacagatgttgagtttttccttgtctcacatttctactaattctatctcaca 30516528  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 30506920 - 30506958
Alignment:
Q  158 agtatcatggaatcaatttgctgcttttgcatttgcact 196  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  30506920 agtattatggaatcaatttgctgcttttgcatttgcact 30506958  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 30516547 - 30516613
Alignment:
Q  72 tatttgttatctgctggttagatttaattgttcacttggatttgatatttttaatattgacataact 138  Q
    |||||||||||||||   || ||||||||||||| |||||| | ||||||||||||| |||||||||    
T  30516547 tatttgttatctgctaactaaatttaattgttcatttggatgtaatatttttaatatcgacataact 30516613  T

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Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 30522634 - 30522672
Alignment:
Q  158 agtatcatggaatcaatttgctgcttttgcatttgcact 196  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  30522634 agtattatggaatcaatttgctgcttttgcatttgcact 30522672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 30505858 - 30505899
Alignment:
Q  156 aaagtatcatggaatcaatttgctgcttttgcatttgcactc 197  Q
    ||||||| ||| ||||||||||||||||||||||||||||||    
T  30505858 aaagtattatgtaatcaatttgctgcttttgcatttgcactc 30505899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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