View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12558_low_10 (Length: 364)
Name: NF12558_low_10
Description: NF12558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12558_low_10 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 13 - 364
Target Start/End: Complemental strand, 42678719 - 42678368
Alignment:
| Q |
13 |
cagaccaccgcatcagcatcgcaaaatgaaacgagtccacaccttgaacagtgttacgaaagaagtcgataccctgacggcggagcatgtcaatggagtc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
42678719 |
cagaccaccgcatcagcatcgcaaaatgaaacgagtccacaccttgaacagtgttacgaaagaagttgataccctgacggtggagcatgtcaatggagtc |
42678620 |
T |
|
| Q |
113 |
tttattgtggaggtccctcttgacgttaaaatcacggaaattgaattcccagatgtaacgattgttctcatcactagggaggttaccaattgcatccgat |
212 |
Q |
| |
|
||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42678619 |
tttgttgtggagatccctcttgacgttaaagtcacggaaattgaattcccagatgtaacgattgttctgatcactagggaggttaccaattgcatccgat |
42678520 |
T |
|
| Q |
213 |
aaggtaagaccgatctgaatgatgtttagagcatcaacgttggctttcaagtaactgtattgctcgttaggttggaggcgacggcggactgtgggtgaat |
312 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42678519 |
aaggtaagaccgatctgaataatgtttagagcatcaacgttggctttcaagtaactgtattgctcgttaggttggaggcgacggcggactgtgggtgaat |
42678420 |
T |
|
| Q |
313 |
gaacaattccaggaaattcagtgtccattgagatgaaattgtatttaccaat |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42678419 |
gaacaattccaggaaattcagtgtccattgagatgaaattgtatttaccaat |
42678368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 74 - 356
Target Start/End: Original strand, 54704090 - 54704375
Alignment:
| Q |
74 |
gaagtcgataccctgacggcggagcatgtcaatggagtctttattgtggaggtccctcttgacgttaaaatcacggaaattgaattcccagatgtaacga |
173 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||| |||| ||||| | ||| | | || ||||| |||| || ||||||||||| ||| ||| | |
|
|
| T |
54704090 |
gaagtcaataccttgacggcggagcatgtcaatggaatcttggttgtgaatgtcgcgcccgatcttaaagtcacaaaagttgaattcccatatgcaacaa |
54704189 |
T |
|
| Q |
174 |
ttgttctcatcactagggaggttaccaattgcatccgataaggtaagaccgatctgaatgatgtttagagcatcaacgttggctttcaagtaactgtatt |
273 |
Q |
| |
|
|||| | | || ||| | |||||| | ||||| | ||| || ||||||||||||||||| || ||||||||||| || | |||||| |||||||||| |
|
|
| T |
54704190 |
atgtttttaaaacgaggaatgttacctttggcatcggttaaagtgagaccgatctgaatgattttaagagcatcaacatttgatttcaaataactgtatt |
54704289 |
T |
|
| Q |
274 |
gctcgttaggttggaggcgacggcg---gactgtgggtgaatgaacaattccaggaaattcagtgtccattgagatgaaattgtat |
356 |
Q |
| |
|
| |||| ||||||||| ||||| | |||| || ||| | || || |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
54704290 |
gttcgtaaggttggagatgacggtggtcgactttgagtggaaaaataacgccaggaaattcagtatccattgagatgaaattgtat |
54704375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University