View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12558_low_12 (Length: 322)
Name: NF12558_low_12
Description: NF12558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12558_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 31346920 - 31346616
Alignment:
| Q |
1 |
tgcagttggagaatgagaatattggaacaacctcaaaccaaagcataaaccaagagttttcttttgggagatattctgatgatgatatctcatctgtggt |
100 |
Q |
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| T |
31346920 |
tgcagttggagaatgagaatattggaacaacctcaaaccaaagcataaaccaagagttttcttttgggagatattctgatgatgatatctcatctgtggt |
31346821 |
T |
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| Q |
101 |
atatggaaatggcatgtttcaaaggtggtttgggaatcaagaactgtcatcagcttctactggacatgtggtcagtgatagcgtgttgaatttctgatta |
200 |
Q |
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| T |
31346820 |
atatggaaatggcatgcttcaaaggtggtttgggaatcaagaactgtcatcagcttctactggacatgtggtcaatgatagcttgaagaatttctgatta |
31346721 |
T |
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| Q |
201 |
caaacaaaatttcatgttggtagtgtgtctgcatgttcatttatctattgtgttttgtggtatacatattttataaggtgtattgtatctatttaatccg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31346720 |
caaacaaaatttcatgttggtagtgtgtctgcatgttcatttatctattgtgttttgtggtatacatattttataaggtgtattgtatctattttatccg |
31346621 |
T |
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| Q |
301 |
aactt |
305 |
Q |
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||||| |
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| T |
31346620 |
aactt |
31346616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 57 - 288
Target Start/End: Complemental strand, 31357536 - 31357303
Alignment:
| Q |
57 |
ttttcttttgggagatattctgatgatgatatctcatctgtggtatatggaaatggcatgtttcaaaggtggtttgggaatcaagaactgtcatcagctt |
156 |
Q |
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| T |
31357536 |
ttttcttttgggagagactctgatgctgatatctcatctgtggtatatggaaatggcatgtttcaaaagttgtcagagaatcaagaattgtcaccagctt |
31357437 |
T |
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| Q |
157 |
ctactggacatgtggtcagtgatagcgtgttgaatttctgattacaaacaaaatttcatgttgg--tagtgtgtctgcatgttcatttatctattgtgtt |
254 |
Q |
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| T |
31357436 |
ctactggacatgtggtcaatgatagcttgtggaatttctgattacaaacaaaatttcatgctggtatagtgtgtctgcatgttcatttatctattgtgtt |
31357337 |
T |
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| Q |
255 |
ttgtggtatacatattttataaggtgtattgtat |
288 |
Q |
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| T |
31357336 |
ttgtggtatacatattttatcaggtgtattgtat |
31357303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 31357580 - 31357544
Alignment:
| Q |
1 |
tgcagttggagaatgagaatattggaacaacctcaaa |
37 |
Q |
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| T |
31357580 |
tgcagttggagaatgagaatattggaacaacctcaaa |
31357544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 7e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 2920466 - 2920624
Alignment:
| Q |
78 |
gatgatgatatctcatctgtggtatatggaaatggcatgtttcaaaggtggtttgggaatcaagaactgtcatcagcttctactggacatgtggtcagtg |
177 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| ||||| ||||||||||||||| || | || || |
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| T |
2920466 |
gatgctgatatctcatctgtggtatatggaaatgacatgtttcaaaggtggtctgggtatcaagatttgtcaccagcttctactggacttgcagccaatg |
2920565 |
T |
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| Q |
178 |
atagcgtgttgaatttctgattacaaacaaaatttcatgttggtagtgtgtctgcatgt |
236 |
Q |
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| T |
2920566 |
atagcttctggaatttctgattacaaacaaaatttcatgttggtagtgtgtctgcatgt |
2920624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 2925851 - 2926009
Alignment:
| Q |
78 |
gatgatgatatctcatctgtggtatatggaaatggcatgtttcaaaggtggtttgggaatcaagaactgtcatcagcttctactggacatgtggtcagtg |
177 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| ||||| ||||||||||||||| || | || || |
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| T |
2925851 |
gatgctgatatctcatctgtggtatatggaaatgacatgtttcaaaggtggtctgggtatcaagatttgtcaccagcttctactggacttgcagccaatg |
2925950 |
T |
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| Q |
178 |
atagcgtgttgaatttctgattacaaacaaaatttcatgttggtagtgtgtctgcatgt |
236 |
Q |
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| T |
2925951 |
atagcttctggaatttctgattacaaacaaaatttcttgttggtagtgtgtctgcatgt |
2926009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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