View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12558_low_13 (Length: 312)
Name: NF12558_low_13
Description: NF12558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12558_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 40854932 - 40855223
Alignment:
| Q |
1 |
gggcaatgttggatgaaaagaagcccaattaaccccacgatcatgaccttccaaaacatacttaacaacagcatcaacaccgccaaaaagatcagtattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40854932 |
gggcaatgttggatgaaaagaagcccaattaaccccacgatcatgaccttccaaaacatatttaacaacagcatcaacaccgccaaaaagatcagtattc |
40855031 |
T |
|
| Q |
101 |
atctgacccaacctcaatatatcatccgccggagaagcactcttccttttcaaggatccaatatcccaaacacgaacagtctgatccaacgacgcagaca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40855032 |
atctgacccaacctcaatatatcatccgccggagaagcactcttccttttcaaggatccaatatcccaaacacgaacagtctgatccaacgacgcagaca |
40855131 |
T |
|
| Q |
201 |
caacaagatcatctttgggatgaaaaagcgcacacatcacataatgattgtgtccagtcaaaacagaaatgcaagtacgtgactgccagttc |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40855132 |
caacaagatcatctttgggatgaaaaagcgcacacatcacataatgattgtgtccagtcaaaacagaaatgcaagtacgtgactgccagttc |
40855223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 2 - 288
Target Start/End: Original strand, 26805115 - 26805401
Alignment:
| Q |
2 |
ggcaatgttggatgaaaagaagcccaattaaccccacgatcatgaccttccaaaacatacttaacaacagcatcaacaccgccaaaaagatcagtattca |
101 |
Q |
| |
|
|||| ||| |||||||||| |||||| || || || || |||||||||||||| || ||||||||||| ||||| ||||| ||||||||||| || |||| |
|
|
| T |
26805115 |
ggcagtgtaggatgaaaagcagcccagttgacaccccggtcatgaccttccaacacgtacttaacaactgcatcgacaccaccaaaaagatccgtgttca |
26805214 |
T |
|
| Q |
102 |
tctgacccaacctcaatatatcatccgccggagaagcactcttccttttcaaggatccaatatcccaaacacgaacagtctgatccaacgacgcagacac |
201 |
Q |
| |
|
|||||| ||| | ||| |||||||| | |||| || ||||||||| | || ||||||||||||||||||||||||||||||| || || ||||| |
|
|
| T |
26805215 |
tctgactcaatcgcaaaatatcatctgaaggaggtccagccttccttttgagagaaccaatatcccaaacacgaacagtctgatccagggaggctgacac |
26805314 |
T |
|
| Q |
202 |
aacaagatcatctttgggatgaaaaagcgcacacatcacataatgattgtgtccagtcaaaacagaaatgcaagtacgtgactgcca |
288 |
Q |
| |
|
||||| ||| ||||| ||||| || |||||||| |||||||| ||||| ||||| |||||||| || || |||||||||||||| |
|
|
| T |
26805315 |
aacaatatcctcttttggatggaatgaagcacacataacataatggttgtgcccagttaaaacagatatacaggtacgtgactgcca |
26805401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University