View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12558_low_15 (Length: 307)
Name: NF12558_low_15
Description: NF12558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12558_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 12 - 292
Target Start/End: Original strand, 16943568 - 16943846
Alignment:
| Q |
12 |
aagaacctttattattt-aatccaagtgcttttgagttgcatttgactatttcttatatatattgaaaaataatataaataacacaatgattatattttt |
110 |
Q |
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| T |
16943568 |
aagaacctttattattttaatccaagtacttttgagttgcatttgactatttcttatatatattgaaaaataatataaataacacaatgattatattttt |
16943667 |
T |
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| Q |
111 |
ctttcagnnnnnnnnnnnnnnnncagaatgattgtattttaaagagtttgtttgttttgttgtgattgttgtattcgccatttcactgagtcac------ |
204 |
Q |
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| T |
16943668 |
ctttca------aaaaaaaaaaacataatgattatattttaaaga----gtttgttttgttgtgattgttgtattcgccatttgactgagtcactgacca |
16943757 |
T |
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| Q |
205 |
-tggaatttgttcgtttcatagcagtgacagtaaccgcatactttagttccaccagaaatagaaaagtcaattgcgatcattttccaac |
292 |
Q |
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| T |
16943758 |
atggaatttgttcgtttcataacagtgacagtaaccgcatagtttagttcctccagaaatagaaaagtcaattgcgatcattttccaac |
16943846 |
T |
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