View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12558_low_16 (Length: 285)
Name: NF12558_low_16
Description: NF12558
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12558_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 31357662 - 31357939
Alignment:
| Q |
1 |
ttacttcagctaaaggataaacatccatttgctttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattt |
100 |
Q |
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| T |
31357662 |
ttacttcagctaaaggataaacatccaattgttttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattt |
31357761 |
T |
|
| Q |
101 |
tggtttcaccttgttttgagagaaatcagaaagagtggtttggttttcactattgtatggagaagaatccaataattgaggcaatagagattcattagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31357762 |
tggtttcaccttgttttgagagaaatcagaaagagtggtttggttttcactattgtatggagaagaatccaataattgaggcaatagagattcattagta |
31357861 |
T |
|
| Q |
201 |
tttgatggtccttctctagaggagttaaaccttccatgttttgaaccatcctttttctttccacaatttttcttctca |
278 |
Q |
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| T |
31357862 |
tttgatggtccttctctagaggagttaaaccttccatgttttgaaccatcctttttctttccacaatttttcttctca |
31357939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 31347002 - 31347279
Alignment:
| Q |
1 |
ttacttcagctaaaggataaacatccatttgctttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattt |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31347002 |
ttacttcagctaaaggataaacatccatttgttttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattt |
31347101 |
T |
|
| Q |
101 |
tggtttcaccttgttttgagagaaatcagaaagagtggtttggttttcactattgtatggagaagaatccaataattgaggcaatagagattcattagta |
200 |
Q |
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| T |
31347102 |
tggtttcaccttgttttgagagaaatcagaaagagtggtttggttttcactattgtatggagaagaatccaataattgaggcaatagagattcattagta |
31347201 |
T |
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| Q |
201 |
tttgatggtccttctctagaggagttaaaccttccatgttttgaaccatcctttttctttccacaatttttcttctca |
278 |
Q |
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| T |
31347202 |
tttgatggtccttctctagaggagttaaaccttccatgttttgaaacatcctttttctttgcacaatttttcttctca |
31347279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 29272410 - 29272304
Alignment:
| Q |
4 |
cttcagctaaagg---ataaacatccatttgctttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattt |
100 |
Q |
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||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
29272410 |
cttcagctaaagggttataaacatccatttgttttgaagaggatgaaatgttcaagatactagtttcattgttgtgaacaatgttgtcatcttgtgtttt |
29272311 |
T |
|
| Q |
101 |
tggtttc |
107 |
Q |
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||||||| |
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| T |
29272310 |
tggtttc |
29272304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 29272239 - 29272202
Alignment:
| Q |
183 |
aatagagattcattagtatttgatggtccttctctaga |
220 |
Q |
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| T |
29272239 |
aatagagatgcattagtatttgatgctccttctctaga |
29272202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 2925752 - 2925652
Alignment:
| Q |
7 |
cagctaaaggataaacatccatttgctttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattttggttt |
106 |
Q |
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|||||||||| |||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
2925752 |
cagctaaagggtaaacatccatttgttttgaagacgatgaaatgttcaagatacttgtttcattgttatgaacaatgttgtcatattgtgtttttggttt |
2925653 |
T |
|
| Q |
107 |
c |
107 |
Q |
| |
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| |
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|
| T |
2925652 |
c |
2925652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 2920357 - 2920267
Alignment:
| Q |
17 |
ataaacatccatttgctttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaatgttgtcatcttgtgattttggtttc |
107 |
Q |
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| T |
2920357 |
ataaacatccatttgttttgaagaggatgaaatgttcaagatacaagtttcattgttatgaacaatgttgtcatcttgtgtttttgatttc |
2920267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 120 - 268
Target Start/End: Complemental strand, 2925612 - 2925461
Alignment:
| Q |
120 |
gagaaatcagaaagagtggtttggttttcactattgtatggagaagaatccaataattgaggcaatagagattc---attagtatttgatggtccttctc |
216 |
Q |
| |
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|||||||||| || |||| ||| |||||||||||||| |||||| | ||||| ||| ||| | |||||||| | |||||||||||||||| |||||| |
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| T |
2925612 |
gagaaatcaggaatagtgattttattttcactattgtagggagaaaattccaaaaatggagcccatagagatgctgcattagtatttgatggttcttctc |
2925513 |
T |
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| Q |
217 |
tagaggagttaaaccttccatgttttgaaccatcctttttctttccacaatt |
268 |
Q |
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||||||||||| |||||||| |||||||||||| | |||||||||||||||| |
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| T |
2925512 |
tagaggagttagaccttccaagttttgaaccattcattttctttccacaatt |
2925461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 178 - 268
Target Start/End: Complemental strand, 2920241 - 2920151
Alignment:
| Q |
178 |
gaggcaatagagattcattagtatttgatggtccttctctagaggagttaaaccttccatgttttgaaccatcctttttctttccacaatt |
268 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| | |||| ||||||||||| |
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| T |
2920241 |
gaggcaatagagttgcattagtatttgatggtccttctctagaggagttagaccttccaagttttgaaccattcattttgtttccacaatt |
2920151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 9447781 - 9447671
Alignment:
| Q |
4 |
cttcagctaaagg---ataaacatccatttgctttgaagaggatgaaatgttcaagata----ctagtttcattgttatgaacaatgttgtcatcttgtg |
96 |
Q |
| |
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||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
9447781 |
cttcagctaaagggttataaacatccatttgttttgaagaggatgaaatgttcaagatatatactagtttcattgttatgaacaatgttgtcgtcttgtg |
9447682 |
T |
|
| Q |
97 |
attttggtttc |
107 |
Q |
| |
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|||||||||| |
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| T |
9447681 |
tttttggtttc |
9447671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 9447611 - 9447549
Alignment:
| Q |
158 |
tggagaagaatccaataattgaggcaatagagattcattagtatttgatggtccttctctaga |
220 |
Q |
| |
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||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
9447611 |
tggagaataatccaacaatggaggcaatagagatgcattagtatttgatggtccttctctaga |
9447549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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